Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f01r
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09) 28 3.1
SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94) 27 7.2
SB_40377| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_33923| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_32724| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0029) 27 9.5
SB_22943| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025) 27 9.5
SB_36735| Best HMM Match : Sin_N (HMM E-Value=0.082) 27 9.5
>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +2
Query: 302 LKTRALLVELGSATSLVDTATTAVNTNKRANFILQNRSELKFRLKS 439
L TRA +V L +T+++ ATT V +K + ++ ELK +++S
Sbjct: 625 LATRAPIVSLSKSTNIISKATTFVAVDKSTHEVIA-VPELKAQVES 669
>SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09)
Length = 334
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 266 RNSLSFEAIVPMLKTRALLVELGSATSLVDTATTAVNTNKRANFILQN 409
+N F+A +P L L +G+ SLV T +R+N++L N
Sbjct: 15 KNEGVFKAAIPCLTVLGLWAIIGNTISLVVLLKTKSLRRRRSNYLLVN 62
>SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94)
Length = 472
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 178 HPSPASGSVTVRDCPRCGG-RCRL 110
H S S VR C +CGG RCR+
Sbjct: 422 HSSLKEDSTQVRGCEKCGGKRCRV 445
>SB_40377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 1 MLSFGWVDRSAEASPNLYIKVKS 69
+LS GW+D +A N+ KVKS
Sbjct: 186 LLSIGWMDEAARRLANIVNKVKS 208
>SB_33923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -2
Query: 211 VYSTQQYA--HQGHPSPASGSVTV 146
+Y TQ YA H G P ASG +T+
Sbjct: 30 IYPTQSYAWLHNGKPLNASGRITI 53
>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 28 SAEASPNLYIKVKSSAR*VYEPKSDGVPADTAPHNADSR 144
SA+ASP++ + + ++ P S +P+ AP N ++R
Sbjct: 1020 SADASPSITLTRRRKVAELWRPVSLMLPSQLAPENGNAR 1058
>SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1001
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 DAPTCRTRMALMRILLGAVYLKSTICEVAVTPRVTEKLR-NSLSF 283
DA R + RILLG+VY ST C+ R+ E L+ N+ SF
Sbjct: 836 DARPRRLPRKISRILLGSVY-HSTSCDEVENCRLLEHLQSNTESF 879
>SB_32724| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0029)
Length = 302
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 DAPTCRTRMALMRILLGAVYLKSTICEVAVTPRVTEKLR-NSLSF 283
DA R + RILLG+VY ST C+ R+ E L+ N+ SF
Sbjct: 104 DARPRRLPRKISRILLGSVY-HSTSCDEVENCRLLEHLQSNTESF 147
>SB_22943| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 DAPTCRTRMALMRILLGAVYLKSTICEVAVTPRVTEKLR-NSLSF 283
DA R + RILLG+VY ST C+ R+ E L+ N+ SF
Sbjct: 213 DARPRRLPRKISRILLGSVY-HSTSCDEVENCRLLEHLQSNTESF 256
>SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)
Length = 731
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 DAPTCRTRMALMRILLGAVYLKSTICEVAVTPRVTEKLR-NSLSF 283
DA R + RILLG+VY ST C+ R+ E L+ N+ SF
Sbjct: 487 DARPRRLPRKISRILLGSVY-HSTSCDEVENCRLLEHLQSNTESF 530
>SB_36735| Best HMM Match : Sin_N (HMM E-Value=0.082)
Length = 546
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 7 SFGWVDRSAEASPNLYIKVKSSAR*VYEPKSDGVPADTAPHNA 135
+ G D EA NL V ++ + EP SD VPA H+A
Sbjct: 60 AIGKDDGLQEACTNLKPNVHGTSVEIQEPCSDRVPASNPVHSA 102
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,002
Number of Sequences: 59808
Number of extensions: 283805
Number of successful extensions: 660
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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