Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f01r
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-9|CAB62796.1|  597|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF348169-1|AAK37547.1|  597|Caenorhabditis elegans IKB-1 protein.      27   6.3  
AC006672-6|AAK84541.2|  341|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z81461-9|CAB62796.1|  597|Caenorhabditis elegans Hypothetical
           protein C04F12.3 protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 254 TEKLRNSLSFEAIVPMLKTRALLVELGSATSLVD 355
           TEK RN+L     +   +T  LLVE GS T++ D
Sbjct: 314 TEKKRNALMHAIEMNDFETIQLLVERGSGTNIED 347


>AF348169-1|AAK37547.1|  597|Caenorhabditis elegans IKB-1 protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 254 TEKLRNSLSFEAIVPMLKTRALLVELGSATSLVD 355
           TEK RN+L     +   +T  LLVE GS T++ D
Sbjct: 314 TEKKRNALMHAIEMNDFETIQLLVERGSGTNIED 347


>AC006672-6|AAK84541.2|  341|Caenorhabditis elegans Hypothetical
           protein K08D12.2 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 169 PASGSVTVRDCPRC 128
           PA+GSV VRDC  C
Sbjct: 105 PAAGSVFVRDCANC 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,888,554
Number of Sequences: 27780
Number of extensions: 191933
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)