Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f01r
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   0.88 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.2  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 300 IGTIASNDRLLRSFSVTR 247
           IGT+A+ND +L S S  +
Sbjct: 174 IGTLATNDNILESISYVK 191


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 29 QPKHPQICTLKLN 67
          QP  P  CT +LN
Sbjct: 5  QPNRPSYCTWELN 17


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 316 SVSGTGVSHFIS*HRDDRGQYEQ 384
           ++ GT + H ++ HR  R  YE+
Sbjct: 149 NLGGTTLHHGMAYHRGHRKDYER 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,751
Number of Sequences: 438
Number of extensions: 2062
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)