Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e24r
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761...    33   0.20 
11_05_0030 - 18487272-18487544                                         31   1.1  
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610           29   2.5  
10_08_0058 + 14521922-14522779                                         29   3.3  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    29   3.3  
09_04_0407 + 17345382-17345579,17345711-17346235                       29   4.4  
04_04_1086 - 30725010-30725138,30725748-30725786,30725876-307259...    28   7.6  

>07_03_1619 +
           28174991-28175804,28175945-28175968,28176075-28176170,
           28176285-28176466,28176623-28176836,28177262-28177499,
           28177709-28177865,28177950-28178246
          Length = 673

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 450 ASTAPGGTSPFVENCQANMDGTSTSNWSFRTS 545
           +STA GG  PF E+C +  DGT   N +++++
Sbjct: 20  SSTAAGGEVPFYEDCPSTADGTYAPNSTYQSN 51


>11_05_0030 - 18487272-18487544
          Length = 90

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = -1

Query: 487 STNGEVPPGAVEAGSTADGEKLYFGRVNHDG 395
           ST G+ P G  EAGS ADG K   G V  DG
Sbjct: 27  STGGDRPVGGAEAGSLADGRKR--GPVGLDG 55


>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
          Length = 164

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 468 RPALSRL-APQLTGRSFTSAGSIMTDALRLARSTRHTHVAITRLMAKKGAP 319
           RP L+RL AP      F+S+ S    + RLA  TRH  ++   L +  GAP
Sbjct: 2   RPLLARLFAPTYIAMGFSSSAS--PPSRRLAHLTRHLLLSSGELSSSVGAP 50


>10_08_0058 + 14521922-14522779
          Length = 285

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 414 PK*SFSPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSS 548
           P  S  P+A+  ++T P  T P  +   + +D      WS+R+SS
Sbjct: 7   PACSAPPAALGSSTTTPTATPPRAQFTVSLLDELGRPGWSYRSSS 51


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 409 PCRSKASPRQLWSQPRQRRAGLRHLSRT 492
           P R    PR++WS PR R   LRH SR+
Sbjct: 347 PRRRLTPPRRMWSPPR-RPQSLRHRSRS 373


>09_04_0407 + 17345382-17345579,17345711-17346235
          Length = 240

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +2

Query: 329 FFAIKRVIATCV*RVDLARRSASVMIDPAEVKLLPVSCGASLDSAGRDFAICRELPG 499
           FF++K   +    R      SA   +DP    L P       D  G  F +CR LPG
Sbjct: 140 FFSVKSFFSRSTSRGATVASSAFAAVDPPPPLLSPAKWEGLRDCEGWPFGLCR-LPG 195


>04_04_1086 -
           30725010-30725138,30725748-30725786,30725876-30725998,
           30726953-30727015,30727540-30727620,30727998-30728088,
           30728295-30728366,30728452-30728552,30728681-30728779,
           30729132-30729329,30730792-30730824,30731084-30731192,
           30732088-30732149,30732388-30732468,30732549-30732704,
           30732812-30732976,30733351-30733413,30733492-30733545,
           30733574-30733612,30733727-30733783,30733862-30733930,
           30734022-30734135,30734216-30734284,30734821-30734927,
           30735207-30735363
          Length = 776

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 28  K*YLSFDIIYKCLKNNLTS*NMSYHKTNSHEIIL 129
           K Y + D+ Y+ LKN +TS +MSYH T+  + ++
Sbjct: 705 KAYRANDVTYELLKN-ITSIDMSYHITSDSKKVV 737


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,070,388
Number of Sequences: 37544
Number of extensions: 370437
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)