Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10e24r
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54237-1|CAA90987.2| 445|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 5.1
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 28 5.1
Z68220-6|CAA92486.3| 293|Caenorhabditis elegans Hypothetical pr... 28 6.8
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 27 9.0
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 27 9.0
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 27 9.0
>Z54237-1|CAA90987.2| 445|Caenorhabditis elegans Hypothetical
protein T11B7.1 protein.
Length = 445
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 205 TTYGLIDIMH*IIELIEVNFQSRFSITFSTLVPSIHILRSSFLRHQTGNSNMR 363
T G+IDI+H I ++V QS+ +I FS +P + +++ Q + N +
Sbjct: 27 TVQGIIDILHDTISYVQVEKQSK-TINFS--IPHLQMIKEQLESIQLKDKNYK 76
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 432 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 554
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1702 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1741
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 432 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 554
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 432 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 554
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 432 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 554
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1702 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1741
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 432 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 554
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 432 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 554
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 432 PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 554
P A P S APG + F NC A+ D + W FR + P
Sbjct: 1794 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1833
>Z68220-6|CAA92486.3| 293|Caenorhabditis elegans Hypothetical
protein T20D3.3a protein.
Length = 293
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 55 YKCLKNNLTS*NMSYHKTNSHEIILIDLMINDKLK 159
++C +N LT S +HEI+LID ++ +K
Sbjct: 67 FECAENILTGLRESTKNNRTHEIMLIDSLLQCSIK 101
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 429 SPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 554
SPS+ +S P +SP E+ Q S S S T+ PP
Sbjct: 231 SPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPP 272
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 429 SPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 554
SPS+ +S P +SP E+ Q S S S T+ PP
Sbjct: 231 SPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPP 272
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 429 SPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 554
SPS+ +S P +SP E+ Q S S S T+ PP
Sbjct: 231 SPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPP 272
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,790,937
Number of Sequences: 27780
Number of extensions: 318956
Number of successful extensions: 885
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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