Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e24r
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59800.1 68418.m07497 methyl-CpG-binding domain-containing pr...    28   4.8  
At2g32140.1 68415.m03928 disease resistance protein (TIR class),...    27   8.4  

>At5g59800.1 68418.m07497 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 306

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 498 PGSSRQMAKSRPALSRLAPQLTGRSFTSAGSIMTDALRLARSTR 367
           PG+ RQ +        LA ++  R  T AGS   D  R+   +R
Sbjct: 56  PGTGRQFSSLEAIHRHLAGEVNDRRLTRAGSFFQDKTRVYEGSR 99


>At2g32140.1 68415.m03928 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 589 VIPTKNACYISFGGEEVLKDQFEVLVPSM 503
           VIPT    +ISF G+E+ K     LVP++
Sbjct: 16  VIPTGPQVFISFRGKELRKGFISFLVPAL 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,805,283
Number of Sequences: 28952
Number of extensions: 289182
Number of successful extensions: 678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)