Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10e24f
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761... 33 0.20
11_05_0030 - 18487272-18487544 31 1.1
12_02_1217 + 27082452-27083593,27085041-27085158 29 2.5
06_03_0688 - 23525513-23525958,23527920-23529861,23529960-23530070 29 2.5
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610 29 2.5
10_08_0058 + 14521922-14522779 29 3.3
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 3.3
09_04_0407 + 17345382-17345579,17345711-17346235 29 4.3
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455... 29 4.3
07_01_1181 + 11203073-11203604,11204124-11204143 28 5.7
08_02_0723 - 20422219-20423796 28 7.5
04_04_1330 - 32700333-32700770 28 7.5
03_05_0847 + 28186873-28188147 27 9.9
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534... 27 9.9
>07_03_1619 +
28174991-28175804,28175945-28175968,28176075-28176170,
28176285-28176466,28176623-28176836,28177262-28177499,
28177709-28177865,28177950-28178246
Length = 673
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 328 ASTAPGGTSPFVENCQANMDGTSTSNWSFRTS 233
+STA GG PF E+C + DGT N +++++
Sbjct: 20 SSTAAGGEVPFYEDCPSTADGTYAPNSTYQSN 51
>11_05_0030 - 18487272-18487544
Length = 90
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = +3
Query: 291 STNGEVPPGAVEAGSTADGEKLYFGRVNHDG 383
ST G+ P G EAGS ADG K G V DG
Sbjct: 27 STGGDRPVGGAEAGSLADGRKR--GPVGLDG 55
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 114 VGTDADGDEIYAGRAHHEGDIVPAKVIPTKNACY 215
VG+DADGD++Y G E P P Y
Sbjct: 50 VGSDADGDDLYGGELEEEDSPRPPPPRPLSGLFY 83
>06_03_0688 - 23525513-23525958,23527920-23529861,23529960-23530070
Length = 832
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = -2
Query: 125 IGTDPEGTWWDAALA*ASGDPTVCAW---HVGCGVACLQ 18
+ D +G WW A + A C + H GCGV Q
Sbjct: 156 VAVDGDGKWWGAGVGNAGYAGVPCTYFKQHTGCGVTLYQ 194
>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
Length = 164
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 310 RPALSRL-APQLTGRSFTSAGSIMTDALRLARSTRHTHVAITRLMAKKGAP 459
RP L+RL AP F+S+ S + RLA TRH ++ L + GAP
Sbjct: 2 RPLLARLFAPTYIAMGFSSSAS--PPSRRLAHLTRHLLLSSGELSSSVGAP 50
>10_08_0058 + 14521922-14522779
Length = 285
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 364 PK*SFSPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSS 230
P S P+A+ ++T P T P + + +D WS+R+SS
Sbjct: 7 PACSAPPAALGSSTTTPTATPPRAQFTVSLLDELGRPGWSYRSSS 51
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 369 PCRSKASPRQLWSQPRQRRAGLRHLSRT 286
P R PR++WS PR R LRH SR+
Sbjct: 347 PRRRLTPPRRMWSPPR-RPQSLRHRSRS 373
>09_04_0407 + 17345382-17345579,17345711-17346235
Length = 240
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -2
Query: 449 FFAIKRVIATCV*RVDLARRSASVMIDPAEVKLLPVSCGASLDSAGRDFAICRELPG 279
FF++K + R SA +DP L P D G F +CR LPG
Sbjct: 140 FFSVKSFFSRSTSRGATVASSAFAAVDPPPPLLSPAKWEGLRDCEGWPFGLCR-LPG 195
>02_05_0869 -
32344821-32344916,32345255-32345347,32345418-32345551,
32345863-32346013,32346337-32346407,32346683-32346828,
32347172-32347221,32347552-32347628,32347716-32347776,
32347859-32347912,32347999-32348058,32348491-32348624,
32349740-32350418
Length = 601
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -2
Query: 179 NDVTFVVSSSRVDLITVSIGTDPEGTWWDAALA*ASGDPTVCAWHVGCGV 30
NDVT +SSS +D +SIG P +A+ +P A V GV
Sbjct: 416 NDVTIALSSSNLDKFLMSIGRQPAYVDLEASPVVGKDNPPDLADFVPSGV 465
>07_01_1181 + 11203073-11203604,11204124-11204143
Length = 183
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +1
Query: 31 TPQPTCQAHTVGSPLA*ASAASHQVPSGS-----VPMLTVMRS 144
TP PT T G+P A A AAS S S VP+LT S
Sbjct: 12 TPSPTRPLRTPGTPSAGAGAASSSSSSSSSWRSCVPLLTTFSS 54
>08_02_0723 - 20422219-20423796
Length = 525
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = -1
Query: 162 GELFPRRSHHR---QHRYRP*GHLVGCCAGLSK 73
G FPRR HHR +R G VGC G +
Sbjct: 417 GRRFPRRVHHRGASMVSHRADGRFVGCVQGYDR 449
>04_04_1330 - 32700333-32700770
Length = 145
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 102 GALRVGTDADGDEIYAGRAHHEGD 173
G+ R G +DG+E+ GR HEG+
Sbjct: 20 GSRRRGGGSDGEELGGGRDEHEGE 43
>03_05_0847 + 28186873-28188147
Length = 424
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 27 SDATTDMPG-TYRWVPACLSQRSIPPGALRVGTDADGDEIYAGRAHHEGDIVPA 185
++ATTD P R VP+ S ++ T DGD+ H G PA
Sbjct: 326 AEATTDAPAPALRRVPSSTSTTTLAAAVAVASTSTDGDDDDDEPHHPPGAAAPA 379
>02_01_0714 +
5339408-5340020,5340117-5340319,5340408-5340605,
5340703-5340774,5341197-5341292,5341828-5341907,
5341993-5342068,5342152-5342362,5342562-5342755,
5342834-5342939,5343037-5343126,5343470-5344206
Length = 891
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 309 GLRHLSRTARRTWMVLVPQTGLLEPL 232
G RHL+ T TWM L+P+ L P+
Sbjct: 77 GDRHLTPTDESTWMSLMPRRLLASPV 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,398,407
Number of Sequences: 37544
Number of extensions: 462242
Number of successful extensions: 1343
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -