Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e23r
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    27   1.8  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   5.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.1  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   9.4  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   9.4  

>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +2

Query: 224 EGDGSGSLSNDVLKGKSSGSERPXD-----AXENADFSFSGTD 337
           EG     LSND L+   S +  P D     + ENAD+SFS  D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 91  YPDGPIAAEVXPCSGVASPNSSS 23
           Y DGP+ A   P S   +PNS S
Sbjct: 268 YFDGPLTASPTPSSPTGTPNSMS 290


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 8/135 (5%)
 Frame = +3

Query: 162 LDLTSPIVIAAPMSLTMMLSARETEAVA-SATTFSRASPPEAKDLXTRLKMRISPSAEP- 335
           L  + P+  +   SL+   S+ +    + S++TFS A+P             +S S+ P 
Sbjct: 164 LSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPS 223

Query: 336 -TDAETLGTARTKLSRVP-----T*LTRRICRELKSSALTSVTRPEKLMMSDAPGGLQEP 497
            + + TL ++    S +P     +  T        SS+  S +     ++S +      P
Sbjct: 224 SSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSP 283

Query: 498 A*PSRRIGSAALNNS 542
              S  I S++ ++S
Sbjct: 284 TSTSSTISSSSSSSS 298


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 141 PKRLIWRLDLTSPI 182
           PK LIWR  LT+P+
Sbjct: 436 PKELIWRSRLTNPV 449


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 197 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPXDAXENAD 316
           +  DN ++     SGS + D +  +  G+E+  D  EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,624
Number of Sequences: 5004
Number of extensions: 37002
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)