Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10e23r
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1110 + 30973202-30973870 31 1.0
12_01_0204 + 1539859-1540158 30 1.4
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 30 1.4
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 29 4.2
06_03_0291 + 19198302-19198333,19199218-19199734,19200171-192003... 28 5.6
12_01_0506 + 4017568-4017716,4018171-4018474 28 7.4
04_04_1344 + 32787574-32787632,32788488-32789070,32789211-327894... 28 7.4
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 27 9.7
03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389 27 9.7
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 27 9.7
>04_04_1110 + 30973202-30973870
Length = 222
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 162 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLXTRLKMRISPSAEP 335
L + + + +P S T+ S+R+T A A ++A P + L L M +A+P
Sbjct: 97 LPKAAALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 502 YAGSWSPPGASDIINFSGRVTDVKADD 422
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +2
Query: 128 SNFXSEEIDLEVRFDIANSYCSSDVTDN---DVVCEGDGSGSLSNDVLKGKSSG 280
SN +D E +A C D+ + D++ EGD G L+ D + G
Sbjct: 54 SNSMKMHVDAETAGGVALDVCKGDILEKKQCDIIAEGDRGGVLTVDTCNAEEDG 107
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 616 RDVDFEPNSQRILDIVISNXFNEIGELLRAAD 521
RDV+ PN + + D+ N +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249
>06_03_0291 +
19198302-19198333,19199218-19199734,19200171-19200383,
19201067-19201111,19201671-19201945,19202041-19202152,
19202453-19202539,19202727-19202963,19204127-19204825
Length = 738
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 87 G*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVA 245
G TG F+ +L G + L W LD TS V + P S + + E EA A
Sbjct: 562 GRTGFFNSDVLKGGDFCGEELLTWALDPTS--VSSLPSSTRTVKTMSEVEAFA 612
>12_01_0506 + 4017568-4017716,4018171-4018474
Length = 150
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 110 EVVDGWSNFXSEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLK-GKSSGS 283
++ DG ++ + E D+E++ D Y + DV + V E GSG V + G++SGS
Sbjct: 89 DLCDGSADNSNYEADMELKVDSEEEYVNMDVEVD--VGEATGSGCKGKAVEEHGEASGS 145
>04_04_1344 +
32787574-32787632,32788488-32789070,32789211-32789423,
32789884-32790173,32791201-32791312,32791394-32791630,
32791714-32792394
Length = 724
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = +3
Query: 54 HGCTSAAIGPSG*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARET 233
HGC + G +G F++ L G + L W LD S P S + + E
Sbjct: 543 HGCLESETTDGGRSGFFNKVQLKEGAFCGDELLTWALDPKS--AANFPASTRTVKALTEV 600
Query: 234 EAVA 245
EA A
Sbjct: 601 EAFA 604
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +2
Query: 197 DVTDNDVV---CEGDGSGSLSNDVLKGKSSGSER 289
++ +ND++ C G G+GS S DVL +SG E+
Sbjct: 73 ELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEK 106
>03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389
Length = 711
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 57 GCTSAAIGPSG*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETE 236
GC + G +G F+R LL + L W LD + ++ P S + + E E
Sbjct: 532 GCLESITTDGGRSGFFNRSLLEESDFCGEELLTWALDPKAG--LSLPSSTRTVRALSEVE 589
Query: 237 AVA 245
A A
Sbjct: 590 AFA 592
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 143 EEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSER-PXDAXENADF 319
EE D E+ D+ + CSSD + + D S NDV SG + D ++ ++
Sbjct: 419 EEYD-EIFDDLEDGSCSSDAYTDSEDGDVDKEYSTDNDVDGSYDSGEDNIEEDMEDDTEY 477
Query: 320 SFSGTD 337
S G++
Sbjct: 478 SSGGSE 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,163,363
Number of Sequences: 37544
Number of extensions: 282915
Number of successful extensions: 938
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -