Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e23r
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog...    30   1.6  
U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    27   8.7  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    27   8.7  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical
           protein F10B5.4 protein.
          Length = 426

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 490 WSPPGASDIINFSGRVTDVKADDFSSLHMRRVSYV 386
           W+    S ++NF GRVT     +F  +H     Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386


>AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog
           protein.
          Length = 426

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 490 WSPPGASDIINFSGRVTDVKADDFSSLHMRRVSYV 386
           W+    S ++NF GRVT     +F  +H     Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386


>U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK1290.10 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = +3

Query: 159 RLDLTSPIVIAAPMSLTMM-LSARETEAVASATTFSRASP-----PEAKDLXTRLKMRIS 320
           RLD T P+  A P+ L ++ ++ +E +  AS T+   A P     P A       +  + 
Sbjct: 59  RLDNTIPVPPALPIGLPIIQITTKEPQPPASLTSLPAAPPSAQVAPPAIRPPEAKRTSLE 118

Query: 321 PSAEPTDAETLGTARTKLSRVPT 389
           P    T   ++ +  T L R PT
Sbjct: 119 PPQPSTPQASISSTTTVLIRNPT 141


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
            R13G10.1 protein.
          Length = 1469

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 637  CVSAV-PHRDVDFEPNSQRILDIVISNXFNEIGELLRAADPIRRD 506
            C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1094 CISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
            condensation protein protein.
          Length = 1469

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 637  CVSAV-PHRDVDFEPNSQRILDIVISNXFNEIGELLRAADPIRRD 506
            C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1094 CISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/88 (21%), Positives = 37/88 (42%)
 Frame = +3

Query: 222 ARETEAVASATTFSRASPPEAKDLXTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LTR 401
           A + E  +S +   ++   EAK      K  + PSA  +D  +  T  T +++ P   T+
Sbjct: 689 AEKPEGSSSGSATEKSKEIEAKSKKDDTKKPLEPSAASSDPSSSSTTTTTITKEPP--TQ 746

Query: 402 RICRELKSSALTSVTRPEKLMMSDAPGG 485
                  ++A  +  +P +   + A  G
Sbjct: 747 SASASGAAAAAAASAQPSESSSATAASG 774


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,133,837
Number of Sequences: 27780
Number of extensions: 219324
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)