Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e23r
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p...    29   2.0  
At3g13410.1 68416.m01686 expressed protein                             29   2.7  
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    29   3.5  
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta...    29   3.5  
At4g01960.1 68417.m00261 expressed protein                             28   6.1  
At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic...    28   6.1  
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l...    28   6.1  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    27   8.1  

>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
           protein (GI:507127) [Streptococcus pyogenes]
          Length = 509

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +3

Query: 108 RKLLTAGP-TSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 284
           RK LTAG   SRPK   +R D++  +++      T  +  ++ EAV    T +      +
Sbjct: 130 RKTLTAGDIASRPKMETFR-DISDDMMVNEDKDETFDMHIQKVEAVLKDLTMTSEKSHSS 188

Query: 285 KDLXTRLKMRISPSAEPTDAETLGTARTKLS 377
             L       +  S++ TD + +   R+ LS
Sbjct: 189 DSLAKNTSANVDFSSQKTD-DPVTDVRSDLS 218


>At3g13410.1 68416.m01686 expressed protein
          Length = 321

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 122 GWSNFXSEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 253
           GWSNF   E  LE   D+A  +   ++  +DV  + +   +L N
Sbjct: 70  GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113


>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 146 EIDLEVRFDIANSY--CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPXDAXEN 310
           E  +E   DI N    CS   +D+    EG+    L N+ L+ +S+GS+   D   N
Sbjct: 126 EDKVETNDDIKNEEAGCSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182


>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
           domain-containing protein similarity to
           TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
           SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
           DnaJ domain, PF00515: TPR Domain
          Length = 1165

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 547 IGELLRAADPIRRDGYAGSWSPPGASDIINFSGRVTDVKADDFSSLHMRRVSYVGT 380
           +GE +  +D + R    GS +  G     +F G V + K  DF+S      S+VGT
Sbjct: 218 VGEKI-LSDDLSRKLSVGSMTTDGNHSGDSFQGSVNEKKVHDFNSSCPMNYSFVGT 272


>At4g01960.1 68417.m00261 expressed protein
          Length = 236

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 143 EEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSS--GSERPXD 298
           EE DL+V  +      + ++T N V  EGD S ++ N V  G+ S  GSE+  D
Sbjct: 8   EEEDLDVDIEDGRFNETQEITTNLVSAEGD-SENVLNHVWSGRLSFDGSEKSAD 60


>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical
           to receptor kinase (CLV1) GB:AAB58929 GI:2160756
           [Arabidopsis thaliana]
          Length = 980

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
 Frame = -3

Query: 232 VSLADNIIVSDIGAAITIGDVKSNLQI--NLFGREVGPAVNNFLEKIPVYPD-----GPI 74
           + L DN    ++   ++ GDV   + +  N F  E+ PA+ NF     ++ D     G I
Sbjct: 438 IELTDNFFSGELPVTMS-GDVLDQIYLSNNWFSGEIPPAIGNFPNLQTLFLDRNRFRGNI 496

Query: 73  AAEVXPCSGVASPNSSSTRLT 11
             E+     ++  N+S+  +T
Sbjct: 497 PREIFELKHLSRINTSANNIT 517


>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
           similarity to dienelactone hydrolase [Rhodococcus
           opacus] GI:23094407; contains Pfam profile PF01738:
           Dienelactone hydrolase family
          Length = 310

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 451 GRVTDVKADDFSSLHMRRVSYVGTRLNLVLA 359
           GRV DV A D S      VS+ GTR++  +A
Sbjct: 205 GRVVDVLATDESGYFSTGVSFYGTRIDSAVA 235


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 188  CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPXDAXE 307
            CSS  ++  VV EG+G   ++ ++ + KS+  E   D+ E
Sbjct: 990  CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,608,827
Number of Sequences: 28952
Number of extensions: 208005
Number of successful extensions: 580
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)