Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e23f
         (601 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L08825-1|AAA28914.1|  723|Drosophila melanogaster single-strande...    30   2.8  
AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA ...    29   3.7  

>L08825-1|AAA28914.1|  723|Drosophila melanogaster single-stranded
           recognition proteinprotein.
          Length = 723

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 585 DGWSNFASEEIDL---EXRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSER 415
           DG S+  S + D    E   D+A  Y S++ +D+D   +  G G  S+   K K   SE+
Sbjct: 469 DGDSDEESTDEDFKPNENESDVAEEYDSNEESDSDEDSDASGGGGDSDGAKKKKEKKSEK 528

Query: 414 PQ 409
            +
Sbjct: 529 KE 530


>AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA
           protein.
          Length = 1286

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 29/109 (26%), Positives = 41/109 (37%)
 Frame = -3

Query: 584 TAGPTSRPKRLIWXLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRT 405
           T+GPT+   R        SP     P S T   ++R T     +TT +    P     R+
Sbjct: 504 TSGPTTTTPRSTTTTCTCSP-TTTTPRSTTTPSTSRPTTTTPRSTTTTCTCSPTTTTPRS 562

Query: 404 RLKMRISPSAEPTDAETLGTARTKLSRXPT*LTRRKCRELKSSALTSVT 258
                 + ++ PT      T  T  SR PT  T R      +S  T+ T
Sbjct: 563 ---TTTTSTSRPTTTTPRSTTTTTTSR-PTTTTPRSTTTTSTSGPTTTT 607



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 30/109 (27%), Positives = 41/109 (37%)
 Frame = -3

Query: 584  TAGPTSRPKRLIWXLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRT 405
            T+GPT+   R       TS      P S T   ++  T     +TT +  S P     R+
Sbjct: 936  TSGPTTTTPRST-TTTCTSCPTTTTPRSTTTTCTSCPTTTTPRSTTTTCTSGPTTTTPRS 994

Query: 404  RLKMRISPSAEPTDAETLGTARTKLSRXPT*LTRRKCRELKSSALTSVT 258
              K   + +  PT      T  T  SR PT  T R      +S  T+ T
Sbjct: 995  TTK---TSTCAPTTTTPRSTTTTSTSR-PTTTTPRSTTTTTTSRPTTTT 1039


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,125,894
Number of Sequences: 53049
Number of extensions: 433883
Number of successful extensions: 1495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)