Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10e20f
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 29 0.62
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 28 1.1
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 4.4
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 26 4.4
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 5.8
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.6
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 29.1 bits (62), Expect = 0.62
Identities = 33/135 (24%), Positives = 59/135 (43%)
Frame = +3
Query: 228 VVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIAT 407
V+I HG G+ + K F D ++ +D S A ++ + +
Sbjct: 23 VLIFHGLLGSKRNWRSLAKK--FSCKLDRDIYAIDQRCHGDSP-CVAPLSYSAMALDAFQ 79
Query: 408 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDA 587
F+K+ KL +K I+G ++GA A VT KV ++ +D S W ++ R A
Sbjct: 80 FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNS--PWYQDLPR--DYGA 133
Query: 588 QYVEVIHTDGSGVXK 632
+ ++I D + + K
Sbjct: 134 YFRKMIQIDEANITK 148
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = +3
Query: 126 YYYSNAQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTS 305
YY++ A SI ++ F +GN + + ++ I + + + T I PIV S
Sbjct: 94 YYFNPAGLYSIIISAREFASGNLLSLDQSRHFSIQATLSATTSGSGTIILPIVAGMGFVS 153
Query: 306 GDYNVIVVDWSSFSLSTYSTAV 371
G Y + ++S L + T +
Sbjct: 154 GYYTNLTPVFNSSILFSSITKI 175
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 586 ASFVPSRSTLFSQSRAEGSRPVILATLPSK 497
+ F +FS EGSRPV LA L S+
Sbjct: 461 SGFSVREEAVFSSPTTEGSRPVSLARLKSE 490
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 81 DAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAARFNNNWDIVVI 236
DAI+ +E+ NK +A N+IT D G+D +F +WD +V+
Sbjct: 216 DAIEFMEKNVEKNK-----SAMSNNIT--SDILVWGHDIPRKFRRHWDYIVM 260
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.8 bits (54), Expect = 5.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAARFN------NNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T DIV + G++GT T+T+
Sbjct: 848 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 906
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 907 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 943
Score = 25.8 bits (54), Expect = 5.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAARFN------NNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T DIV + G++GT T+T+
Sbjct: 892 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 950
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 951 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 987
Score = 25.8 bits (54), Expect = 5.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAARFN------NNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T DIV + G++GT T+T+
Sbjct: 936 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 994
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 995 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1031
Score = 25.8 bits (54), Expect = 5.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAARFN------NNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T DIV + G++GT T+T+
Sbjct: 980 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 1038
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 1039 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1075
Score = 25.8 bits (54), Expect = 5.8
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAARFN------NNWDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T DIV + G++GT T+T+
Sbjct: 1024 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 1082
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 1083 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1119
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 156 SNFSVHCYSNNIYLNFQIAP 97
+NF+ C N +LNFQI P
Sbjct: 417 NNFTSTCAFENSHLNFQITP 436
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,889
Number of Sequences: 5004
Number of extensions: 59911
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -