Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10e16f
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013) 51 7e-07
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1) 29 3.3
SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40) 29 4.4
SB_31228| Best HMM Match : EMP24_GP25L (HMM E-Value=0.22) 29 4.4
SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08) 28 5.8
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 28 5.8
SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07) 28 5.8
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 28 5.8
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34) 28 7.6
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 7.6
SB_47139| Best HMM Match : Ion_trans_2 (HMM E-Value=0.62) 28 7.6
SB_44710| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_11762| Best HMM Match : 4HBT (HMM E-Value=1.6e-19) 28 7.6
>SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)
Length = 185
Score = 51.2 bits (117), Expect = 7e-07
Identities = 30/83 (36%), Positives = 41/83 (49%)
Frame = +3
Query: 261 GVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEAT 440
G G F GLA YL S EI ++ E Y + Y K G +A LD +
Sbjct: 69 GSLGQLMFFGGLAAYLLSNEILIIHEETYIAAVMGGTFYWLMKKAGGPIAEMLDNTSQEI 128
Query: 441 ENEWNEGRNQTVKALEDAIEGEK 509
+ +N GRN ++K L+DAI+ EK
Sbjct: 129 LDAFNVGRNASIKHLQDAIDNEK 151
>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -1
Query: 341 FVLHYIDFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFA 201
+VL+ IDF A C HT + H +F+VE F R KS F+
Sbjct: 21 YVLNSIDFEA----CDKHTIGIAYAHAAFKVEAATKFTREPLKSGFS 63
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 29.9 bits (64), Expect = 1.9
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Frame = +3
Query: 417 LDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQ--GQELLIQAKKENV-----LL 575
L++E+E+ + E E R + VKA E E+ EQ++A+ ++ IQA + + L
Sbjct: 1543 LEEEIESKDAEAEEERTRIVKAAE-GFALEREEQFKAELADKDDCIQATENELNQVKHQL 1601
Query: 576 QLEAAYRERLMYAYSEVKRRLDYQLE 653
QL ++ L+ A E R L++ E
Sbjct: 1602 QLAQEAKKTLLEASDERDRELEHLKE 1627
>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +2
Query: 62 NNVVARGFAFRCEQTDRVHSTSRTGLRLRCSNTRPENLCSPCKG*ARQS*TWLYS*RMVP 241
+ + G+ R + ++ G+R +C N ++C C+ R + T + +P
Sbjct: 98 DQAIKEGYIHRGITCNTCQASPICGVRYKCGNCVDYDICERCESQDRHNSTHAFIKIRIP 157
Query: 242 ILPLEN 259
I PL N
Sbjct: 158 IPPLAN 163
>SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 497 RGREDGAVARAGTGAPHPGQEGERAPAARG 586
RG E AGT A H G G APA G
Sbjct: 204 RGYEQKTPESAGTSARHSGASGREAPAEAG 233
>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
Length = 444
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 89 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 181
+RC TD H T T +R T P+ LC+
Sbjct: 2 YRCHTTDCAHCTDFTRQTVRTVQTPPDRLCA 32
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 89 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 181
+R QTD H T T LR T P+ LC+
Sbjct: 194 YRHHQTDCAHCTDFTRQTLRIVQTPPDRLCA 224
>SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)
Length = 351
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2
Query: 409 ANFGPNFT*ATYTMTSSDSPE*YS 338
ANFGP FT T+T TS D+ E +S
Sbjct: 89 ANFGPGFT--TFTYTSGDARETFS 110
>SB_31228| Best HMM Match : EMP24_GP25L (HMM E-Value=0.22)
Length = 350
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/73 (19%), Positives = 35/73 (47%)
Frame = +3
Query: 384 HVKFGPKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKE 563
H + P+L W++ + + E + + + + +A E + E+ R Q +E + +E
Sbjct: 61 HRECSPELKPWMEAQQKEMEEKLRLKKEEEERIQREAEEAAERERLRIQAEEEARRKAEE 120
Query: 564 NVLLQLEAAYRER 602
+++E R++
Sbjct: 121 EERIRIEEIKRQQ 133
>SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08)
Length = 277
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +3
Query: 417 LDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYR 596
L K +E T+ E +E + ALE+AIE +K+ + EL I+ + + +E R
Sbjct: 90 LCKTLEVTDRESDEKMRELEDALEEAIELDKSTADKLAEVELKIKVVQGELEKAVERGDR 149
Query: 597 ERLM 608
+M
Sbjct: 150 AEMM 153
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 524 RAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGL 643
R+ G PGQ+GE P+ GR G ++ + SG+
Sbjct: 429 RSTRGTALPGQDGEDRPSGEGRQSGGPGIQAVWEAGTSGV 468
>SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)
Length = 750
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 489 DAIEGEKTEQWRAQGQELLIQAKKENVL 572
D + + +QW EL ++ KKENVL
Sbjct: 238 DVVLADLDQQWMLDSAELCLEEKKENVL 265
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 28.3 bits (60), Expect = 5.8
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +3
Query: 216 GFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKF 395
GF+ E++F SK+ +G+A+Y S I+ + Y +G + +
Sbjct: 2183 GFLREKYFVIGISKSFEISANKTRIGVASYSSSANIHFNFNTYNTGYDVENAINAISFSG 2242
Query: 396 GPK--LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELL 545
G K LA LD E N + + + + AL +G T++ Q L+
Sbjct: 2243 GAKRNLARGLDATFEGLFN-FTDIQPSDINALIVLTDGRATDEIDMAAQRLV 2293
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 524 RAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGL 643
R+ G PGQ+GE P+ GR G ++ + SG+
Sbjct: 1096 RSTRGTALPGQDGEDRPSGEGRQSGGPGIQAVWEAGTSGV 1135
>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
Length = 524
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 47 IKYTINNVVARGFA-FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 181
I YT+ R A +R QTD H T T +R T P+ LC+
Sbjct: 14 IVYTVQTSPDRLCALYRHHQTDCAHCTVTTRQTVRTVQTPPDRLCA 59
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 420 DKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQ 578
+KEVE NE + + KALE A G+K E+ + + ++ +E LQ
Sbjct: 2190 EKEVEMLSRV-NELQEELAKALESAEAGKKAEKQLKEQESEHVELSREKEALQ 2241
>SB_47139| Best HMM Match : Ion_trans_2 (HMM E-Value=0.62)
Length = 116
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 150 HRRRSPVRLVLCT--RSVCSHLNAKPRATTLFIVYF 49
HRRR P ++L + R C+ +N+K AT L +Y+
Sbjct: 58 HRRRRPAAILLQSYWRMYCADINSKSVATWLPHIYY 93
>SB_44710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 835
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 287 TKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKGFLVVCCY 150
TK + H+ R + PFF ++ K + W T A+ G++V Y
Sbjct: 149 TKEINNMHSELR--KSIPFFSSRYKGHGIWDTLMAANLGYMVAFMY 192
>SB_11762| Best HMM Match : 4HBT (HMM E-Value=1.6e-19)
Length = 519
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 474 VKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQL--EAAYRERLMYAYSEVKRRL 638
V ++ED I GEK E R + AK V L ERL YA + +RR+
Sbjct: 91 VVSVEDLITGEKREVSRGFFTFVAFDAKHNKVQLSPIDPVTEEERLQYALASERRRM 147
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,058,949
Number of Sequences: 59808
Number of extensions: 457691
Number of successful extensions: 1526
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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