Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10e16f
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X60221-1|CAA42782.1| 256|Homo sapiens H+-ATP synthase subunit b... 138 2e-32
BC016350-1|AAH16350.1| 256|Homo sapiens ATP synthase, H+ transp... 138 2e-32
BC005366-1|AAH05366.1| 256|Homo sapiens ATP synthase, H+ transp... 138 2e-32
AY871272-1|AAX11428.1| 256|Homo sapiens cell proliferation-indu... 138 2e-32
AL390195-7|CAC36042.1| 256|Homo sapiens ATP synthase, H+ transp... 138 2e-32
AK223018-1|BAD96738.1| 256|Homo sapiens ATP synthase, H+ transp... 138 2e-32
BC005960-1|AAH05960.1| 256|Homo sapiens ATP synthase, H+ transp... 134 3e-31
AL390195-8|CAI15628.1| 195|Homo sapiens ATP synthase, H+ transp... 99 7e-21
BC131805-1|AAI31806.1| 913|Homo sapiens CCDC46 protein protein. 36 0.17
AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250... 33 1.2
AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associ... 33 1.2
AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome assoc... 33 1.2
BC119788-1|AAI19789.1| 626|Homo sapiens APOB48R protein protein. 32 1.6
BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48 rece... 32 1.6
AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein... 32 1.6
AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48 rece... 32 1.6
AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48 rece... 32 1.6
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 31 4.7
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 31 4.7
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 31 4.7
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 31 4.7
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 31 4.7
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 31 4.7
J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein. 30 6.3
BC022018-1|AAH22018.1| 396|Homo sapiens DDI1, DNA-damage induci... 30 8.3
BC022017-1|AAH22017.1| 396|Homo sapiens DDI1, DNA-damage induci... 30 8.3
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 30 8.3
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 30 8.3
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 30 8.3
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 30 8.3
AK128829-1|BAC87629.1| 385|Homo sapiens protein ( Homo sapiens ... 30 8.3
AK093336-1|BAC04135.1| 396|Homo sapiens protein ( Homo sapiens ... 30 8.3
AF429971-1|AAP97303.1| 396|Homo sapiens hypothetical protein pr... 30 8.3
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 8.3
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 8.3
AB065557-1|BAC45258.1| 542|Homo sapiens seven transmembrane hel... 30 8.3
>X60221-1|CAA42782.1| 256|Homo sapiens H+-ATP synthase subunit b
protein.
Length = 256
Score = 138 bits (334), Expect = 2e-32
Identities = 83/202 (41%), Positives = 114/202 (56%), Gaps = 7/202 (3%)
Frame = +3
Query: 66 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 227
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 228 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 404
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLVLYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 405 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 584
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 585 AAYRERLMYAYSEVKRRLDYQL 650
YRERL Y EVK RLDY +
Sbjct: 180 VTYRERLYRVYKEVKNRLDYHI 201
>BC016350-1|AAH16350.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 138 bits (333), Expect = 2e-32
Identities = 83/202 (41%), Positives = 114/202 (56%), Gaps = 7/202 (3%)
Frame = +3
Query: 66 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 227
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 228 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 404
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 405 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 584
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 585 AAYRERLMYAYSEVKRRLDYQL 650
YRERL Y EVK RLDY +
Sbjct: 180 VTYRERLYRVYKEVKNRLDYHI 201
>BC005366-1|AAH05366.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 138 bits (333), Expect = 2e-32
Identities = 83/202 (41%), Positives = 114/202 (56%), Gaps = 7/202 (3%)
Frame = +3
Query: 66 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 227
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 228 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 404
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 405 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 584
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 585 AAYRERLMYAYSEVKRRLDYQL 650
YRERL Y EVK RLDY +
Sbjct: 180 VTYRERLYRVYKEVKNRLDYHI 201
>AY871272-1|AAX11428.1| 256|Homo sapiens cell
proliferation-inducing protein 47 protein.
Length = 256
Score = 138 bits (333), Expect = 2e-32
Identities = 83/202 (41%), Positives = 114/202 (56%), Gaps = 7/202 (3%)
Frame = +3
Query: 66 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 227
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 228 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 404
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 405 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 584
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 585 AAYRERLMYAYSEVKRRLDYQL 650
YRERL Y EVK RLDY +
Sbjct: 180 VTYRERLYRVYKEVKNRLDYHI 201
>AL390195-7|CAC36042.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 138 bits (333), Expect = 2e-32
Identities = 83/202 (41%), Positives = 114/202 (56%), Gaps = 7/202 (3%)
Frame = +3
Query: 66 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 227
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 228 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 404
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 405 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 584
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 585 AAYRERLMYAYSEVKRRLDYQL 650
YRERL Y EVK RLDY +
Sbjct: 180 VTYRERLYRVYKEVKNRLDYHI 201
>AK223018-1|BAD96738.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit b
isoform 1 pr protein.
Length = 256
Score = 138 bits (333), Expect = 2e-32
Identities = 83/202 (41%), Positives = 114/202 (56%), Gaps = 7/202 (3%)
Frame = +3
Query: 66 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 227
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 228 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 404
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 405 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 584
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 585 AAYRERLMYAYSEVKRRLDYQL 650
YRERL Y EVK RLDY +
Sbjct: 180 VTYRERLYRVYKEVKNRLDYHI 201
>BC005960-1|AAH05960.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 134 bits (323), Expect = 3e-31
Identities = 81/202 (40%), Positives = 113/202 (55%), Gaps = 7/202 (3%)
Frame = +3
Query: 66 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 227
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 228 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 404
EE+FQF + KTGVTGPY G GL Y SK IYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKGIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 405 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 584
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 585 AAYRERLMYAYSEVKRRLDYQL 650
YRERL Y EV+ RLDY +
Sbjct: 180 VTYRERLYRVYKEVRNRLDYHI 201
>AL390195-8|CAI15628.1| 195|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 195
Score = 99 bits (238), Expect = 7e-21
Identities = 53/134 (39%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Frame = +3
Query: 252 SKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPKLAAWLDKE 428
S GPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP +A + DK
Sbjct: 8 SAAATAGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIK-KYGPFVADFADKL 66
Query: 429 VEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLM 608
E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE YRERL
Sbjct: 67 NEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLY 126
Query: 609 YAYSEVKRRLDYQL 650
Y EVK RLDY +
Sbjct: 127 RVYKEVKNRLDYHI 140
>BC131805-1|AAI31806.1| 913|Homo sapiens CCDC46 protein protein.
Length = 913
Score = 35.5 bits (78), Expect = 0.17
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 420 DKEVEATENEWNEGRNQTVKALEDAIEGEKTE-QWRAQGQELLIQAKKENVLLQLEAAYR 596
D ++EA N WN G + K +E EK + Q + I +K N + +L+ YR
Sbjct: 201 DSDIEARLNSWNLGLDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYR 260
Query: 597 ERLMYAYSEVKRRLDYQLE 653
+ + E R+L+ +++
Sbjct: 261 SK-QHETEETIRKLEKKVQ 278
>AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250kDa
protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.2
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +3
Query: 414 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 584
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associated
protein 1 protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.2
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +3
Query: 414 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 584
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome associated
protein protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.2
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +3
Query: 414 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 584
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>BC119788-1|AAI19789.1| 626|Homo sapiens APOB48R protein protein.
Length = 626
Score = 32.3 bits (70), Expect = 1.6
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +3
Query: 195 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 374
E + G + EW HS T GP G +E E E L+L
Sbjct: 67 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 126
Query: 375 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 539
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 127 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 186
Query: 540 LLIQAK--KENVLLQLEAAYRERL 605
L +A+ +E+ L ++ A E L
Sbjct: 187 LAAEAEGDRESELSEVPEAGGEGL 210
>BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 32.3 bits (70), Expect = 1.6
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +3
Query: 195 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 374
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 375 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 539
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 540 LLIQAK--KENVLLQLEAAYRERL 605
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein
B48 receptor type 2 protein.
Length = 1076
Score = 32.3 bits (70), Expect = 1.6
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +3
Query: 195 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 374
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 375 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 539
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 540 LLIQAK--KENVLLQLEAAYRERL 605
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 32.3 bits (70), Expect = 1.6
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +3
Query: 195 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 374
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 375 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 539
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 540 LLIQAK--KENVLLQLEAAYRERL 605
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 32.3 bits (70), Expect = 1.6
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +3
Query: 195 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 374
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 375 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 539
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 540 LLIQAK--KENVLLQLEAAYRERL 605
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 30.7 bits (66), Expect = 4.7
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 470 NRESTGGRNRGREDGAV---ARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASG 640
+R T R R R V +R+ + A G+ R PA RGR + R RG + S
Sbjct: 615 SRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR--RGRSRSR 672
Query: 641 LPAR 652
PAR
Sbjct: 673 TPAR 676
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 30.7 bits (66), Expect = 4.7
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 470 NRESTGGRNRGREDGAV---ARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASG 640
+R T R R R V +R+ + A G+ R PA RGR + R RG + S
Sbjct: 615 SRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR--RGRSRSR 672
Query: 641 LPAR 652
PAR
Sbjct: 673 TPAR 676
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 30.7 bits (66), Expect = 4.7
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 470 NRESTGGRNRGREDGAV---ARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASG 640
+R T R R R V +R+ + A G+ R PA RGR + R RG + S
Sbjct: 615 SRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR--RGRSRSR 672
Query: 641 LPAR 652
PAR
Sbjct: 673 TPAR 676
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 30.7 bits (66), Expect = 4.7
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 470 NRESTGGRNRGREDGAV---ARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASG 640
+R T R R R V +R+ + A G+ R PA RGR + R RG + S
Sbjct: 580 SRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR--RGRSRSR 637
Query: 641 LPAR 652
PAR
Sbjct: 638 TPAR 641
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 30.7 bits (66), Expect = 4.7
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 470 NRESTGGRNRGREDGAV---ARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASG 640
+R T R R R V +R+ + A G+ R PA RGR + R RG + S
Sbjct: 405 SRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR--RGRSRSR 462
Query: 641 LPAR 652
PAR
Sbjct: 463 TPAR 466
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 30.7 bits (66), Expect = 4.7
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 470 NRESTGGRNRGREDGAV---ARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASG 640
+R T R R R V +R+ + A G+ R PA RGR + R RG + S
Sbjct: 663 SRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR--RGRSRSR 720
Query: 641 LPAR 652
PAR
Sbjct: 721 TPAR 724
>J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein.
Length = 456
Score = 30.3 bits (65), Expect = 6.3
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 467 PNRESTGG--RNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEA 604
P R+ G NRG E GAV GT P PG G P + +GEA
Sbjct: 15 PGRDGAAGVKGNRG-ETGAVGAPGTPGP-PGSPGPAGPTGKQGDRGEA 60
>BC022018-1|AAH22018.1| 396|Homo sapiens DDI1, DNA-damage inducible
1, homolog 1 (S. cerevisiae) protein.
Length = 396
Score = 29.9 bits (64), Expect = 8.3
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 494 NRGRED-GAVARAGTGAP---HPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPA 649
N+ R D +A GT + HPGQ+ +R PAA+ R QG A + G G PA
Sbjct: 90 NQPRVDFSGIAVPGTSSSRPQHPGQQQQRTPAAQ-RSQGLASGEKVAGLQGLGSPA 144
>BC022017-1|AAH22017.1| 396|Homo sapiens DDI1, DNA-damage inducible
1, homolog 1 (S. cerevisiae) protein.
Length = 396
Score = 29.9 bits (64), Expect = 8.3
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 494 NRGRED-GAVARAGTGAP---HPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPA 649
N+ R D +A GT + HPGQ+ +R PAA+ R QG A + G G PA
Sbjct: 90 NQPRVDFSGIAVPGTSSSRPQHPGQQQQRTPAAQ-RSQGLASGEKVAGLQGLGSPA 144
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 29.9 bits (64), Expect = 8.3
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 456 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 280
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 279 CKDPSHQ 259
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 29.9 bits (64), Expect = 8.3
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 456 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 280
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 279 CKDPSHQ 259
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 29.9 bits (64), Expect = 8.3
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 456 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 280
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 279 CKDPSHQ 259
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 29.9 bits (64), Expect = 8.3
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 456 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 280
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 279 CKDPSHQ 259
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AK128829-1|BAC87629.1| 385|Homo sapiens protein ( Homo sapiens
cDNA FLJ46309 fis, clone TESTI4039744. ).
Length = 385
Score = 29.9 bits (64), Expect = 8.3
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +2
Query: 419 GQGXXXXXXXXXXXXXPNRESTGGRNRGREDGAVARAGTGAPH--PGQEGERAP-AARGR 589
G+G P+ GGR R G GAPH G G+R P RGR
Sbjct: 94 GRGAPHLPGGAAGQRRPSPPRRGGRAEAPLTSQAGRPGRGAPHLPDGAAGQRLPQPPRGR 153
Query: 590 LQGE 601
G+
Sbjct: 154 AAGQ 157
>AK093336-1|BAC04135.1| 396|Homo sapiens protein ( Homo sapiens
cDNA FLJ36017 fis, clone TESTI2016298, weakly similar to
DNA-DAMAGE INDUCIBLE PROTEIN DDI1. ).
Length = 396
Score = 29.9 bits (64), Expect = 8.3
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 494 NRGRED-GAVARAGTGAP---HPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPA 649
N+ R D +A GT + HPGQ+ +R PAA+ R QG A + G G PA
Sbjct: 90 NQPRVDFSGIAVPGTSSSRPQHPGQQQQRTPAAQ-RSQGLASGEKVAGLQGLGSPA 144
>AF429971-1|AAP97303.1| 396|Homo sapiens hypothetical protein
protein.
Length = 396
Score = 29.9 bits (64), Expect = 8.3
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 494 NRGRED-GAVARAGTGAP---HPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPA 649
N+ R D +A GT + HPGQ+ +R PAA+ R QG A + G G PA
Sbjct: 90 NQPRVDFSGIAVPGTSSSRPQHPGQQQQRTPAAQ-RSQGLASGEKVAGLQGLGSPA 144
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 29.9 bits (64), Expect = 8.3
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 456 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 280
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 279 CKDPSHQ 259
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 29.9 bits (64), Expect = 8.3
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 456 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 280
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 279 CKDPSHQ 259
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AB065557-1|BAC45258.1| 542|Homo sapiens seven transmembrane helix
receptor protein.
Length = 542
Score = 29.9 bits (64), Expect = 8.3
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 467 PNRESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQ 595
P+ +TGGR GR+ G A G + GE ARGR Q
Sbjct: 33 PDEATTGGRAAGRQGGRAAGWQGGKAAGRRGGEARGGARGRGQ 75
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,157,900
Number of Sequences: 237096
Number of extensions: 2263906
Number of successful extensions: 13759
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 13273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13742
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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