Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10e16f
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri... 32 0.29
At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase, pu... 32 0.29
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 29 2.0
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 29 3.6
At3g22810.1 68416.m02875 expressed protein ; expression support... 28 4.7
At1g32730.1 68414.m04036 expressed protein 28 6.2
At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containi... 27 8.2
At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ... 27 8.2
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ... 27 8.2
>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
Length = 320
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 485 GGRNRGR--EDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHV 610
GGR GR D G G P G G R PA RG ++G + V
Sbjct: 37 GGRGGGRGFSDRGGRGRGRGPPRGGARGGRGPAGRGGMKGGSKV 80
>At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase-related protein XTR4
GI:1244754 from [Arabidopsis thaliana]
Length = 357
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 GFIPEEWFQ--FFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 341
GFI +Q FF S + G YT G+ +A Y + +++V +H+
Sbjct: 73 GFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHD 116
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 473 RESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEA 604
R GG RG + G R G G+ +R P RGR G A
Sbjct: 4 RGGEGGAERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRA 47
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +3
Query: 483 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLE 653
L++ E EK Q A+ + L +AK+E +EAAY+ RL+ +R ++E
Sbjct: 671 LKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVE 727
>At3g22810.1 68416.m02875 expressed protein ; expression supported
by MPSS
Length = 472
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 483 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRR 635
+ED G +W A+G +LL + +K ++ ++ + Y RL ++K R
Sbjct: 340 VEDNFLGHCNREWLARGGQLLKRTRKGDLHWKIVSVYINRLNQVILKMKSR 390
>At1g32730.1 68414.m04036 expressed protein
Length = 327
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +3
Query: 402 KLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQL 581
KL + D+ +E ENE + V LE+A + G Q K+EN++ +L
Sbjct: 137 KLKEYRDRNIEV-ENEAFDRYMSNVNLLEEAFSFTSVPDEESHGTAAPEQNKEENIVSEL 195
Query: 582 EAAYRERLMYAYSEVKR 632
+ R S KR
Sbjct: 196 KLRLRSNSARTESFKKR 212
>At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 974
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 477 KALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 575
+A IEG E+ QG ELL++ KK N+++
Sbjct: 383 QAYASLIEGYCREKNVRQGYELLVEMKKRNIVI 415
>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
thaliana]; contains Pfam PF00046: Homeobox domain and
Pfam PF01852: START domain
Length = 682
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -1
Query: 269 RHTSFRVEELEPFFR 225
RHTS++++ELE FF+
Sbjct: 63 RHTSYQIQELESFFK 77
>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 721
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 290 HTKSVRTRHTSFRVEELEPFFR 225
H K RHT ++ E+E FFR
Sbjct: 67 HKKKKYNRHTQLQISEMEAFFR 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,464,763
Number of Sequences: 28952
Number of extensions: 309770
Number of successful extensions: 967
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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