Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10e15f
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26408| Best HMM Match : Lipase (HMM E-Value=0) 88 7e-18
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41) 76 3e-14
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064) 71 6e-13
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31) 31 1.1
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07) 29 2.6
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0) 29 3.4
SB_3297| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043) 29 4.5
>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
Length = 714
Score = 87.8 bits (208), Expect = 7e-18
Identities = 64/171 (37%), Positives = 92/171 (53%), Gaps = 18/171 (10%)
Frame = +3
Query: 207 FNNNWDIVVIIHGHSG-TATTTINPIV-------KDAFLRSGNYNVIVVDWSSFSLSTYS 362
FN + V+IIHG +G T T+I V K+ L G++NVI+VDW + ++
Sbjct: 101 FNASRRTVIIIHGFAGFTTLTSIRHEVNWWGFPMKNELLWEGDFNVIIVDWMRGAWFPFT 160
Query: 363 TAVMAVTGVGSSIATFLKNLK----LPLNKVHIVGFNLGAHVAGVTGRNLEGK---VARI 521
AV VG+ A L+ L+ L VH++GF+ GAHVAG GR ++ + + RI
Sbjct: 161 RAVANTRLVGAQTARLLQILEERSGRKLAYVHVIGFSFGAHVAGYVGRRMKKRGRMIDRI 220
Query: 522 TGLDPSARDW---ENNVLRLGTNDAQYVEVIHTDGSGVNKNGLGIAIGHID 665
T LDP+A W + +RL T+DA +V+VIHT G+ IGH D
Sbjct: 221 TALDPAAM-WFHKHHEDVRLDTSDALFVDVIHTSAD----YGITSTIGHAD 266
>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
Length = 291
Score = 75.8 bits (178), Expect = 3e-14
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 10/120 (8%)
Frame = +3
Query: 282 VKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKN-LKLPLNK----VH 446
+KD LR + NVI+VDW + Y AV VG+ +A F+K L L ++ H
Sbjct: 115 MKDELLRKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTILSLSGSREGGAFH 174
Query: 447 IVGFNLGAHVAGVTGRNLE--GK-VARITGLDPSARDWENNV--LRLGTNDAQYVEVIHT 611
+GF+LGAH++G G+ L+ G+ + RITGLDP+ ++ +RL DAQ+V+VIHT
Sbjct: 175 SIGFSLGAHISGYVGQRLKRIGRHLDRITGLDPATLMFKGEAPDVRLDRLDAQFVDVIHT 234
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 73.7 bits (173), Expect = 1e-13
Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Frame = +3
Query: 282 VKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKV----HI 449
++ A ++ + NVI DWS + Y A VG+ I +K L ++
Sbjct: 632 IRHALIKQEDANVITTDWSRGATIPYEQATANTRMVGAQITELIKFLNNQTGNTPASFYL 691
Query: 450 VGFNLGAHVAGVTGRNLE---GKVARITGLDPSARDWEN-NV-LRLGTNDAQYVEVIHTD 614
VGF+LGAH++G GR + K+ RITGLDP++ + N +V +RL +DA +V+V+HTD
Sbjct: 692 VGFSLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAHVDVRLDPSDADFVDVMHTD 751
Query: 615 GSGVNKNGLGIAIGHID 665
++ G GHID
Sbjct: 752 ---MDLAGTPTVSGHID 765
>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
Length = 131
Score = 71.3 bits (167), Expect = 6e-13
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Frame = +3
Query: 207 FNNNWDIVVIIHGHSGTATTTINPIVKDAFLRSGNYNVIVVDWSSFS--LSTYSTAVMAV 380
F + +V+IIHG + + +++D L+ NVI VDW S + L+ Y A
Sbjct: 19 FRGDRKLVLIIHGFMQSGNVSWIRVMRDELLKREPMNVITVDWQSGADGLNLYHVAAGNT 78
Query: 381 TGVGSSIATFLKNLK----LPLNKVHIVGFNLGAHVAGVTGRNLEGKVARIT 524
VG+ +A + ++ L +VH++G +LGAHVAG G L GKV RIT
Sbjct: 79 RVVGAQLAELITTIQRVFDFDLRRVHLIGHSLGAHVAGYAGERLSGKVGRIT 130
>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
Length = 624
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 102 RFGSLNKYYYYSNAQRNPITLTEDHFPTGNDPAAPFNNNWDIVVIIHGHSGTATTTIN 275
R+ K Y + ++ R + + HF G++PA ++NN D+ + H + T IN
Sbjct: 548 RYSGCEKSYTHPSSLRKHL---KAHFKCGDNPAGIYDNNNDLETPVPPHRESKTARIN 602
>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +3
Query: 198 AAPFNNNWDIVVIIHGHSGTATTTINPIVKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMA 377
A+ ++ VI HG++ + +T+ ++ A L+ + NV++ DW + Y A
Sbjct: 95 ASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKDDVNVVITDWGPGADGMYWQATAN 154
Query: 378 VTGVGS 395
VG+
Sbjct: 155 TRLVGA 160
>SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Frame = +3
Query: 447 IVGFNLGAHVAGVTG---RNLEG-KVARITG 527
++GF+LG HVAG G +N G K+ RI+G
Sbjct: 21 VIGFSLGGHVAGYAGSRIKNTTGLKLGRISG 51
>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 399 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 539
+ +FL + + K H+ G ++G H+ GV +VA + + P+
Sbjct: 120 LLSFLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 166
>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
Length = 408
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 528 LDPSARDWENNVL--RLGTNDAQYVEVIHTDGSGVNKNGLGIAIGHID 665
LDP+ + N + RL +DA++V+V+HTD ++ G GHID
Sbjct: 2 LDPAGLYFVNEHVDVRLDPSDAEFVDVMHTD---MDFAGTSTQSGHID 46
>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 2497
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 237 IHGHSGTATTTINPIVKDAFLRSGNYNVIV---VDWSSFSLSTYSTAVMAVTGVGSSIAT 407
+ G T TTT N ++K A L++G+Y V + VD+ + +YS + VT +
Sbjct: 58 VTGPRNTITTTKNALIKAASLKAGDYFVRLSASVDYVQ-GMVSYSYGFVRVTAAKPRV-K 115
Query: 408 FLKN 419
FL+N
Sbjct: 116 FLRN 119
>SB_3297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -2
Query: 296 KRVFNNRVDRRRSSATVTVYYYDNIPIIVKGRSRIVSSGKVVFGECNWVSLC 141
K + N RR S Y+ + P V RS + +V C+WV+LC
Sbjct: 78 KTIINQYPAARRYSVITRYYFGVSRPFSVINRSSSIVPKGLVLILCSWVTLC 129
>SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)
Length = 183
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 408 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 539
FL + + K H+ G ++G H+ GV +VA + + P+
Sbjct: 1 FLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,138,565
Number of Sequences: 59808
Number of extensions: 452452
Number of successful extensions: 1177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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