Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e13r
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.88 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   1.5  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   4.7  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   4.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 395  STWQPSLDTNEVTPTCVIWPSSSITVRGPPLSPWQVD 505
            +T +P+  +    PT   WP+   T+  P +   +VD
Sbjct: 1061 TTTRPTTTSTTTRPTTTNWPTQGTTIPPPAVVMPEVD 1097


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -2

Query: 452 AKSHK*ESLRSCPAKAATWIYLQVLSGPAT--TSTGLRRSPV*ISIGHRAQ 306
           +++H   S++S  ++AA   Y    SG +T  TSTGLRR+   + IG + Q
Sbjct: 89  SRAHIHCSVKSESSQAAK--YGGCFSGESTVLTSTGLRRNLSSLQIGEKIQ 137


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 103 NTRDPRNQIPKLRHRFLNSNI 41
           N+R+ RN+  K+R   LNS I
Sbjct: 28  NSREMRNRAEKMRRDKLNSYI 48


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 17  HQKVKLFLNITIQKAVPKFRYL 82
           H K ++FLNIT  K    F ++
Sbjct: 316 HNKTEIFLNITGDKTNSVFEHV 337


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,154
Number of Sequences: 336
Number of extensions: 2735
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)