Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e13r
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    27   3.9  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    27   3.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.8  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   9.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.0  

>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 648 WTGSASPENLNWVFLNGISNLRCMVAYNFSPTIQPSTICT 529
           WT   +P+++ WV+   IS    M+    S   +  +ICT
Sbjct: 86  WTEKRNPKDVFWVYWRSISEWGNMILKWLSDMGREGSICT 125


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 430 DSYLCDLAVFIDHCQRTTAVTLASGLRGVVVTK 528
           D Y  D+A F D  Q T AV LA+ +  + VTK
Sbjct: 260 DHYRPDIACFNDDIQGTGAVALAAIIGALHVTK 292


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 164 QQKHP*PQKHPR*QKHLTQQKHPRPQKP 81
           QQ+   PQ+ P+ Q+H   Q+   PQ+P
Sbjct: 168 QQQQSQPQQQPQQQQHQQPQQPQPPQQP 195


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 567  CRPPYNADSIFRSRTPSSGSP----EMRFRSRCGPIRWRQV 677
            C  P + +  F ++  S+G+     E+RFRS  G  RW  V
Sbjct: 907  CLLPESLEGTFNNQDESNGTKTFAAEIRFRSTDGHYRWHLV 947


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
 Frame = -1

Query: 684  NVRLVASGWGRTWTGSASPENLNWVFLNGISNLRCMVAYNFSPTIQPSTICTLGYNDTTQ 505
            N+R++       W  +       +V    IS++  + A +      PS++ T+  ND+ Q
Sbjct: 2053 NIRIIDKDQEGVWMSNVGIGECAYVHSINISHVLLLQAESSESHYLPSSLATIITNDSAQ 2112

Query: 504  STCQGDSGGPLTVIDEDGQITQVGVTSFVSSEGC-HVDIPAGFI 376
                 +    +T+  + G+ T++G++      G  H++I + +I
Sbjct: 2113 -----ERDEYMTITLQGGRKTRLGLSYTEKYPGIYHIEIFSPYI 2151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,896
Number of Sequences: 5004
Number of extensions: 43627
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)