Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e13r
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    53   3e-07
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    50   2e-06
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    40   0.001
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    40   0.003
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    38   0.006
Z71262-4|CAA95814.1|  775|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    28   6.3  
Z74039-3|CAA98502.1|  410|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 43/135 (31%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
 Frame = -1

Query: 738 YIQPIRLQRSADKDRNYDNVR-LVASGWGRTWTGSASPENLNWVFLNGISNLRCMVAYNF 562
           Y QPI L     KD  Y   R  V SGWG    G    E L    +  I+   C+ +   
Sbjct: 133 YAQPICLP---SKDFVYTPGRQCVVSGWGSM--GLRYAERLQAALIPIINRFDCVNSSQI 187

Query: 561 SPTIQPSTICTLGYNDTTQSTCQGDSGGPLTVIDEDGQITQVGVTSFVSSEGC-HVDIPA 385
             ++  S  C  GY +    +CQGDSGGP     EDG     GV S+   +GC     P 
Sbjct: 188 YSSMSRSAFCA-GYLEGGIDSCQGDSGGPFACRREDGAFVLAGVISW--GDGCAQKKQPG 244

Query: 384 GFIRPGHYLDWFKTV 340
            +     YL W   +
Sbjct: 245 IYTMVAPYLSWISAI 259


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = -1

Query: 687 DNVRLVASGWGRTWTGSA-SPENLNWVFLNGISNLRCMVAYNFSPTIQ-PSTICTLGYND 514
           +N   V +GWG T  GS+ S   L  + +  +S L C    N+   I  PS +C  GY+ 
Sbjct: 173 ENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCA-GYSY 231

Query: 513 TTQSTCQGDSGGPLTVIDEDGQITQVGVTSF 421
               +CQGDSGGPL +   DG     GV S+
Sbjct: 232 GKIDSCQGDSGGPL-MCARDGHWELTGVVSW 261


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
 Frame = -1

Query: 735 IQPIRLQRSADKD-RNYDNVRLVASGWGRTWTGSASPENLNWVFLNG-----ISNLRCMV 574
           I+P+ L     K  + Y N  ++  G       S  P+ +N   L       IS+  C+ 
Sbjct: 139 IKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVK 198

Query: 573 AYNF----SPTIQPSTICTLGYNDTTQSTCQGDSGGPLTVIDEDGQITQVGVTSFVSSEG 406
            + F    S  I    IC   Y      T  GDSGGPL +   +G+  Q+G+TS+  ++G
Sbjct: 199 TWRFLSLLSVKITGYQICAGAY---LHGTAPGDSGGPLLIHKSNGEYVQIGITSY-GADG 254

Query: 405 CH--VD---IPAGFIRPGHYLDWFKTVTG 334
               +D    P  + R   Y+ W + V G
Sbjct: 255 LDGVIDQGKFPGVYTRISKYVPWIQGVIG 283


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = -1

Query: 537 ICTLGYNDTTQS---TCQGDSGGPLTVIDED-GQITQVGVTSFVSSEGCHVDIPAGFIRP 370
           IC    N +  S   TC GDSGG L   D++ G+   + +TSF  + GC  ++ A F R 
Sbjct: 219 ICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSF-GTRGCPSNMLARFTRV 277

Query: 369 GHYLDWFKTVTGL 331
             YL+     TG+
Sbjct: 278 DMYLNLICNYTGV 290


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 182 QLKHPTQQKHP*PQKHPR*QKHLTQQKHPRPQKPDTET 69
           Q++HP QQ HP P   P   + +  Q HP  Q+P T T
Sbjct: 98  QIQHPPQQHHPPPPSPPPVAETIQHQPHPSQQQPSTTT 135


>Z71262-4|CAA95814.1|  775|Caenorhabditis elegans Hypothetical
           protein F22D6.5 protein.
          Length = 775

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 164 QQKHP*PQKHPR*QKHLTQQKHPRPQKPDTETSAP 60
           ++KH   +KH + +KH  ++KH R ++ + E   P
Sbjct: 45  KKKHKKEKKHKKDKKHKKEKKHKREKEVEMENDGP 79


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 167 TQQKHP*PQKHPR*QKHLTQQKHPRPQKP 81
           +   HP  Q HP     +TQQ+HP    P
Sbjct: 446 SMMNHPHQQNHPHMNAQMTQQQHPGQYLP 474


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 167 TQQKHP*PQKHPR*QKHLTQQKHPRPQKP 81
           +   HP  Q HP     +TQQ+HP    P
Sbjct: 443 SMMNHPHQQNHPHMNAQMTQQQHPGQYLP 471


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 555 TIQPSTICTLGYNDTTQSTCQGDSGGPLTVIDEDG 451
           T      C LGY+D T   CQ + G P +++ ++G
Sbjct: 552 TCSTGYFCHLGYDDATTVCCQSE-GDPCSLVVKEG 585


>Z74039-3|CAA98502.1|  410|Caenorhabditis elegans Hypothetical
           protein K03B8.3 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -1

Query: 561 SPTIQPSTICTLGYNDTT---QSTCQGDSGGPLTVIDEDGQITQVGVTSFVSSEGCHVD 394
           +P+     IC LGY        S    D+G PL V D+  ++  VG+ +F S   C ++
Sbjct: 276 NPSKCSECICPLGYGGVLCDRPSLIGKDTGLPLEVKDKIIEVKVVGIDNFFSYPTCLIN 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,916
Number of Sequences: 27780
Number of extensions: 265578
Number of successful extensions: 930
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)