Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e13r
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SD...    32   0.36 
At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SD...    32   0.36 
At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR...    31   0.84 
At3g05680.1 68416.m00634 expressed protein                             29   3.4  
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    29   4.5  
At4g29080.1 68417.m04161 auxin-responsive AUX/IAA family protein...    28   5.9  
At5g13250.1 68418.m01522 hypothetical protein                          28   7.8  

>At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SDR)
           family protein contains oxidoreductase, short chain
           dehydrogenase/reductase family domain, Pfam:PF00106
          Length = 349

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -1

Query: 540 TICTLGYNDTTQSTCQGDSGGPLTVIDEDGQITQVGVTSFVSSEGCHVDIPAGFIRPGHY 361
           TI T GY ++  +  +  SG    ++++D +  QVG     S+ GC   I  G  R   Y
Sbjct: 222 TIVTPGYIESELTQGKYFSGEGELIVNQDMRDVQVGPFPVASASGCAKSIVNGVCRKQRY 281

Query: 360 L---DWFK 346
           +    WFK
Sbjct: 282 VTEPSWFK 289


>At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SDR)
           family protein similar to sterol-binding dehydrogenase
           steroleosin GI:15824408 from [Sesamum indicum]
          Length = 349

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -1

Query: 540 TICTLGYNDTTQSTCQGDSGGPLTVIDEDGQITQVGVTSFVSSEGCHVDIPAGFIRPGHY 361
           TI T GY ++  +  +  SG    ++++D +  QVG     S+ GC   I  G  R   Y
Sbjct: 222 TIVTPGYIESELTQGKYFSGEGELIVNQDMRDVQVGPFPVASASGCAKSIVNGVCRKQRY 281

Query: 360 L---DWFK 346
           +    WFK
Sbjct: 282 VTEPSWFK 289


>At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1261

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 588  LRCMVAYNFSPTIQPSTICTLGYNDTTQSTCQGDSGGPLTVIDE 457
            ++C  +  +S T    ++CT  Y+D T +T  G S G +T + E
Sbjct: 1133 VKCGFSLIYSHTNVDHSLCTDNYSDVTTTTSGGTSSGSITDVGE 1176


>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 543  STICTLGYNDTTQSTCQGDSGGPLTVIDEDGQITQVGVTSF 421
            ST+ + GYN     T +    GP T+  + G ++  G+TS+
Sbjct: 1828 STVQSFGYNHAGVGTTEQQQSGP-TIDHQSGNLSVTGMTSY 1867


>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
            to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
            CREB-binding protein GB:S39162 from [Homo sapiens]
          Length = 1670

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 115  LHNRNTRDPRNQIPKLRH-RFLNSNIQKQFD 26
            LH+RN RDP+ ++PK R  R   S  Q+Q D
Sbjct: 1616 LHSRNCRDPQCKVPKCRELRAHFSRKQQQAD 1646


>At4g29080.1 68417.m04161 auxin-responsive AUX/IAA family protein
           similar to SP|Q38826 Auxin-responsive protein IAA8,
           SP|Q38827 Auxin-responsive protein IAA9 from Arabidopsis
           thaliana; contains Pfam profile: PF02309: AUX/IAA family
          Length = 305

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -1

Query: 642 GSASPENLNWVFLNGISNLRCMVAYN---FSPTIQPSTICTLGYNDTTQSTCQGDSGGPL 472
           GS SPE ++  FL  ++   C V+     FS  I  S         TT +   G   GP 
Sbjct: 51  GSESPERVDSRFL-ALNKSSCPVSGAKRVFSDAINDSNKWVFSPGSTTATGDVGSGSGPR 109

Query: 471 TVIDEDGQIT 442
           T + +DG+ T
Sbjct: 110 TSVVKDGKST 119


>At5g13250.1 68418.m01522 hypothetical protein 
          Length = 286

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 389 GISTWQPSLDTNEVTPTCVIWPSSSITVRGPPLSP 493
           G S++QP L  N+  P  V  PSSS+ V  PP  P
Sbjct: 239 GRSSFQPQLIGND-NPDGVAGPSSSLRVIDPPRRP 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,253
Number of Sequences: 28952
Number of extensions: 243643
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)