Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e13f
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0561 - 22183140-22183185,22183273-22183442,22183554-221836...    30   1.9  
03_05_0382 + 23649597-23649645,23649675-23649735,23650784-236509...    28   5.7  

>06_03_0561 -
           22183140-22183185,22183273-22183442,22183554-22183619,
           22183911-22184010,22184072-22184164,22184259-22184352,
           22185029-22185257,22185460-22185556,22187406-22187710
          Length = 399

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 368 RMIYVLSGLEKQAGTGQVHCSSSDDD 291
           R+ Y   GL+K  G G+VH + SDDD
Sbjct: 318 RLGYKSVGLDKGRGKGKVHATPSDDD 343


>03_05_0382 +
           23649597-23649645,23649675-23649735,23650784-23650937,
           23651019-23651149,23651239-23651315,23651439-23651477,
           23651976-23652067,23652140-23652277,23652385-23652549
          Length = 301

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 177 QLSIRMVSTVGGVNACGATIIHSNWGLTAAHCTGL 281
           ++S  +  +VGGV +   + + + WGL+  HC G+
Sbjct: 13  EISQGLPDSVGGVLSGPVSNVATRWGLSDLHCKGM 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,964,985
Number of Sequences: 37544
Number of extensions: 373278
Number of successful extensions: 1101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)