Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e13f
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    53   2e-07
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    49   3e-06
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    31   0.72 
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    31   0.96 
AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    28   6.8  
Z68493-10|CAA92797.2|  329|Caenorhabditis elegans Hypothetical p...    27   8.9  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 7/183 (3%)
 Frame = +3

Query: 129 SRIVSGWEASEGQFPYQLSIRMVSTVGGVNACGATIIHSNWGLTAAHC--TGLRVT---I 293
           +R+V G+E   G FP+  ++R  +T    + CGA+I+     +TAAHC     RV+   +
Sbjct: 25  ARVVGGFETVPGAFPWTAALRNKATKA--HHCGASILDKTHLITAAHCFEEDERVSSYEV 82

Query: 294 IVRAGAVNLTRPGLLFETTKYINHPEYSENLNVVQPHDIGLIDFGRK-LEFNDYIQPIRL 470
           +V     N T      E   Y+    +      +  HDI +++     +EFN+Y QPI L
Sbjct: 83  VVGDWDNNQTDGN---EQIFYLQRIHFYPLYKDIFSHDIAILEIPYPGIEFNEYAQPICL 139

Query: 471 QRSADKDRNYDNVR-LVASGWGRTWTGSASPENLNWVFLNGISNLRCMVAYNFSPTIQPS 647
                KD  Y   R  V SGWG    G    E L    +  I+   C+ +     ++  S
Sbjct: 140 ---PSKDFVYTPGRQCVVSGWGS--MGLRYAERLQAALIPIINRFDCVNSSQIYSSMSRS 194

Query: 648 TIC 656
             C
Sbjct: 195 AFC 197


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 5/180 (2%)
 Frame = +3

Query: 132 RIVSGWEASEGQFPYQLSIRMVSTVGGVNACGATIIHSNWGLTAAHCTG---LRVTIIVR 302
           R++ G E+S   +P+  +++++S +G  + CG ++I  N+ LTAAHC        +  VR
Sbjct: 57  RLIGGSESSPHSWPW--TVQLLSRLGH-HRCGGSLIDPNFVLTAAHCFAKDRRPTSYSVR 113

Query: 303 AGAVNLTRPGLLFETTKYINHPEYSENLNVVQPHDIGLIDFGRKLEFNDYIQPIRLQRSA 482
            G  + +  G     T    HP Y  N+     +D  ++     +  +   +PI L    
Sbjct: 114 VGG-HRSGSGSPHRVTAVSIHPWY--NIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLP 170

Query: 483 DKDRNYDNVRLVASGWGRTWTGSA-SPENLNWVFLNGISNLRCMVAYNFSPTIQ-PSTIC 656
                 +N   V +GWG T  GS+ S   L  + +  +S L C    N+   I  PS +C
Sbjct: 171 ----AVENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLC 226


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 387 NVVQPHDIGLIDFGRKLEFNDYIQPIRLQRSADKDRNYDNVRLVASGWGRTWTGS 551
           N ++ HD  +++  +++ F++ ++PI L R       Y    L   GWGR +  S
Sbjct: 138 NCLKGHDWAIVEVEKRIHFSENVRPICLPR----PNMYYTKSLAVPGWGRIFNES 188


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
 Frame = +3

Query: 222 CGATIIHSNWGLTAAHCT---GLRVTIIVRAGAVNLTRPGLLFETTKYINHPEYSENLNV 392
           CGAT+I   W +TAAHC      R  + VR    N  R    F   +   H  Y+   N 
Sbjct: 66  CGATVIDDFWLVTAAHCALQLQTRSFVYVREPKNNRERS---FSVKEAYIHSGYN---NQ 119

Query: 393 VQPHDIGLIDFGRKLEFNDYIQPIRLQRSADK-DRNYDNVRLVASGWGRTWTGSASPENL 569
              +DI L+     L     I+P+ L     K  + Y N  ++  G       S  P+ +
Sbjct: 120 TADNDIALLRISSDLS-KLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLI 178

Query: 570 N 572
           N
Sbjct: 179 N 179


>AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.10 protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/88 (25%), Positives = 40/88 (45%)
 Frame = -3

Query: 410 NIMRLHYVQIFAVLRMIYVLSGLEKQAGTGQVHCSSSDDDCYTQTGAVSSCKPPVAMNDG 231
           N+  +  +Q+ + LR+  +  G + +  T Q HC SSD +    +   SS     + ++G
Sbjct: 303 NLAVISGIQVTSSLRIFTISIGAKAEDVTTQSHCISSDANIIKVSPTCSSVYLDGSESNG 362

Query: 230 GSAGVDSSHSTDHTNRELVRELAFTRLP 147
            S     +H   +T     R + F +LP
Sbjct: 363 SSDAQVYAHYLRYTTTYSFR-VWFPKLP 389


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 171 PYQLSIRMVSTVGGVNA-CGATIIHSNWGLTAAHC 272
           P+ + IR+ +  G     CG T+I     LTAAHC
Sbjct: 44  PWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHC 78


>Z68493-10|CAA92797.2|  329|Caenorhabditis elegans Hypothetical
           protein C33A12.14 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 495 NYDNVRLVASGWGRTWTGSASPEN--LNWVFLNGISNLRCMVAYNFSPTIQ 641
           NY  VRL A+GW  ++  S  P    L   F    +N   M+   F P ++
Sbjct: 84  NYLIVRLPATGWFTSYCASIEPNKWLLTISFFTSYTNYTAMIYPFFMPIVR 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,620,084
Number of Sequences: 27780
Number of extensions: 296358
Number of successful extensions: 915
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)