Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e13f
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ...    30   1.6  
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to...    29   2.7  
At1g16590.1 68414.m01987 mitotic spindle checkpoint protein, put...    29   3.6  
At1g16445.1 68414.m01967 methylase-related similar to YtqB (GI:2...    29   3.6  
At1g56670.1 68414.m06517 GDSL-motif lipase/hydrolase family prot...    28   4.8  

>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
           protein similar to ssRNA-binding protein [Dictyostelium
           discoideum] GI:1546894; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 245

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 163 ASSLTSSRFVWSVLWEESTPAEPPSFIATGGLQLLTAPVCV*QSSSELEQ*T*PVPACFS 342
           +SS +SS++ ++     S P +PP   A      + APV     ++   Q   PVPA ++
Sbjct: 10  SSSSSSSQYTYAANSYYSAPYQPPQPYAAAPSPAVPAPVASIPGATVYPQPVGPVPAVYA 69

Query: 343 RP 348
            P
Sbjct: 70  YP 71


>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
           homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
           thaliana]
          Length = 723

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = -3

Query: 317 VHCSSSDDDCYTQTGAVSSCKPPVAMNDGGSAGV-DSSHSTDHTNRELVRE 168
           V  SSSDDD + +T  +   +   + ++G +  +  SS++ DHT+++L+R+
Sbjct: 536 VPTSSSDDDDWDKTARMGK-EDSESEDEGDTVPLKQSSNAEDHTSKKLIRK 585


>At1g16590.1 68414.m01987 mitotic spindle checkpoint protein,
           putative similar to Mad2B protein [Homo sapiens]
           gi|4835900|gb|AAD30290
          Length = 215

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 354 YINHPEYSENLNVVQPHDI 410
           Y+ HP  SE LN+V P D+
Sbjct: 192 YLEHPSLSEPLNLVNPEDV 210


>At1g16445.1 68414.m01967 methylase-related similar to YtqB
           (GI:2952524) [Streptococcus mutans]
          Length = 274

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 288 TIIVRAGAVNLTRPGLLFETTKYINHPEYSENLNVVQPHDIGL 416
           T+     A  + +PG L     YI HP   E L VV+    GL
Sbjct: 203 TLSALKAAERILKPGGLISLVVYIGHPGGREELEVVEAFGSGL 245


>At1g56670.1 68414.m06517 GDSL-motif lipase/hydrolase family protein
           similarity to early early nodulin ENOD8 [Medicago
           sativa] GI:304037, lanatoside 15'-O-acetylesterase
           [Digitalis lanata] GI:3688284, elicitor-induced
           glycoprotein iEP4 [Daucus carota] GI:1911765; contains
           InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L
           family
          Length = 373

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
 Frame = +3

Query: 387 NVVQPHDIGLIDFGRKL-EFNDYIQPIRLQRSADKDRNYDNVRLVASGWGRTW---TGSA 554
           N +   DIG  D  R     N Y Q ++L      +      RL   G  R W   TG  
Sbjct: 167 NALYMIDIGQNDIARSFARGNSYSQTVKLIPQIITEIKSSIKRLYDEGGRRFWIHNTGPL 226

Query: 555 S--PENLNWVFLNGISNLRCMVAYNFSPTI 638
              P+ L+ V    +    C+V+YN + T+
Sbjct: 227 GCLPQKLSMVKSKDLDQHGCLVSYNSAATL 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,915,727
Number of Sequences: 28952
Number of extensions: 280785
Number of successful extensions: 830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)