Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e12r
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    33   0.036
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    31   0.11 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    29   0.78 
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   4.2  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   5.5  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   5.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   7.3  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   7.3  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    25   9.7  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    25   9.7  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   9.7  

>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = -1

Query: 652 IPTSLWLPLCVH-KLGAKFFLIFSLSFAGVVTVGLYYVQNSIQNLVLSCIFEALTSLAIS 476
           +P SL   + V  ++G K  L  SL   GV        + S   L  +C F   + +   
Sbjct: 420 VPGSLIAGVLVEFRIGRKGTLCLSLILTGVFLFASTTAKTSNAYLGWNCTFSFFSDIMYG 479

Query: 475 LVFCVLVDLFPTNLRVMAAALSLTAGR 395
           +++    ++FP+ +R  A  L+ +A R
Sbjct: 480 VLYAYTPEVFPSKVRGTAVGLAASANR 506


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
 Frame = -1

Query: 640 LWLPLCVHKLGAKFFLIFSLSFAGVVTVGLYYVQNSIQNLVLSCIFEAL-TSLAISLVFC 464
           LW P+    +G K  LI  +    + ++ +  V   +Q +++   F     S  +S+V  
Sbjct: 152 LWAPIS-ELVGRKIPLIVGMFMFSIFSIAVA-VAKDVQTVMICRFFSGFCASSPLSVVAA 209

Query: 463 VLVDLFPTNLRVMAAALSLTAGRGGGLIGNLSFGYL 356
              D+F    R  A  +       G LIG ++ G+L
Sbjct: 210 AFADMFDNKTRGPAVCIFACITFAGPLIGPIAGGFL 245


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -1

Query: 637 WLPLCVHKLGAKFFLIFSLSFAGVVTVGLYYVQNSIQNLVLSCIFEALTSLAISLVFC-- 464
           W   CV     + FL+F  + + ++ +  Y     +QN+ +   +E+   L IS   C  
Sbjct: 432 WTGNCVGARNHRTFLLFVFTLSTLIPIYFYVAFYYLQNIPIQKKYESYRCLFISGTICQW 491

Query: 463 VLVDLFPTNLRVMAAALSL 407
            L D+F     V+ A+L+L
Sbjct: 492 SLKDMF-----VLVASLTL 505


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 452 PVPYKSQGNGCRVIADCWSRWRSD 381
           P PY +  N C+++ D +  W+ D
Sbjct: 451 PTPYPALINPCKILPDYFPSWKPD 474


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 108 TSAYEMKELNSDTINNTCLHYLH 176
           T   EM ++N D I   C HY H
Sbjct: 397 TICMEMFKINDDVIQLPCKHYFH 419


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 428 NGCRVIADCWSRW 390
           N C V+  CW++W
Sbjct: 102 NACTVVVGCWNKW 114


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 299  CYTLLLLAKDGTGSLGLNIIYIVQLEFVNRSYNEW 195
            C   LLL+  G GSL      ++ LE ++R+YN +
Sbjct: 1641 CVKELLLSYLGEGSLAAMFYSLLLLEGLSRTYNSF 1675


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -1

Query: 658 ACIPTSLW-LPLCVHKLGAKFFLIFSLSFAGVVTVGLYYVQNSIQNLVLSCIFEALTSLA 482
           AC+  S+  L L + +LG+KF+L FS     V+   L+ VQ ++  +  S +  +L SL 
Sbjct: 213 ACMLISIVSLYLKMRRLGSKFWLFFS-----VLLSTLFSVQFAMTLVRASGVRISLVSLI 267

Query: 481 ISLVFCVLV 455
            SL F + V
Sbjct: 268 ESLPFLINV 276


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -1

Query: 607 AKFFLIFSLSFAGVVTVGLYYVQNSIQNLVLSCIFE---ALTSLAISLVFCVLVDLFPTN 437
           AKF ++ +++ +GV +VG+ Y       +  S  +    AL  L +++   V  D   T 
Sbjct: 232 AKFGVLMAMAISGVSSVGISYTSAWCVRVTSSTTYSMVGALNKLPLAIAGLVFFDAPITF 291

Query: 436 LRVMAAALSLTAG 398
             V A  L   +G
Sbjct: 292 GSVTAILLGFISG 304


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 512 LYL*SPHLARHQSRVLRARRPVPYKSQGNGCRVIADCWS 396
           LY  +  L +HQ RVL      P   +   C ++A  W+
Sbjct: 16  LYNRAVELLKHQQRVLIGLAGGPGSGKSTLCAILAKAWN 54


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 270 VFGKKKQSIAAMNKNAEKTTIGTTQAKSIR*PNERFPIRP-PPRPAVSDNAAAIT 431
           V G    S  +      +TT  TT+A + + P   FP  P  P+PA    AAA+T
Sbjct: 330 VAGASDYSTPSAGYQTVQTTTTTTEAAAAQYPQAAFPPPPVMPQPA----AAAVT 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,793
Number of Sequences: 5004
Number of extensions: 51857
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)