Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10e12r
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0183 - 15522241-15523866 34 0.087
04_01_0445 + 5812277-5813893 34 0.12
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 32 0.35
04_01_0443 - 5776275-5777921 32 0.35
03_01_0357 - 2797523-2799109 32 0.47
03_01_0355 - 2789680-2791263 32 0.47
03_01_0354 + 2785998-2787623 31 1.1
10_08_0182 + 15513693-15515273 30 1.4
08_02_0493 - 17770723-17770758,17770772-17770996,17771051-177720... 30 1.9
01_06_0127 - 26718452-26718989,26719082-26720211 29 2.5
06_02_0169 - 12535102-12536062,12536949-12537646 29 3.3
06_02_0166 + 12522172-12522890,12523567-12524596 29 3.3
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 28 7.6
>10_08_0183 - 15522241-15523866
Length = 541
Score = 34.3 bits (75), Expect = 0.087
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 478 SLVFCVLVDLFPTNLRVMAAALSLTAGRGGGLIGNLSFGY 359
S F V ++FP LR +S AG+ G +IG+ F Y
Sbjct: 427 STTFIVPAEIFPARLRSTCHGISAAAGKAGAIIGSFGFLY 466
>04_01_0445 + 5812277-5813893
Length = 538
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 478 SLVFCVLVDLFPTNLRVMAAALSLTAGRGGGLIGNLSFGY 359
S F V ++FP LR +S AG+ G ++G+ F Y
Sbjct: 420 STTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGSFGFLY 459
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 32.3 bits (70), Expect = 0.35
Identities = 20/91 (21%), Positives = 41/91 (45%)
Frame = -1
Query: 652 IPTSLWLPLCVHKLGAKFFLIFSLSFAGVVTVGLYYVQNSIQNLVLSCIFEALTSLAISL 473
IP S + V ++G K + L + V L + + I V S + ++
Sbjct: 384 IPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARLCISASFTI 443
Query: 472 VFCVLVDLFPTNLRVMAAALSLTAGRGGGLI 380
V+ +++PT++R ++ + GR GG++
Sbjct: 444 VYIYAPEIYPTSVRTTGIGVASSVGRIGGIL 474
>04_01_0443 - 5776275-5777921
Length = 548
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 478 SLVFCVLVDLFPTNLRVMAAALSLTAGRGGGLIGNLSFGY 359
S F V ++FP LR +S AG+ G ++G+ F Y
Sbjct: 429 STTFIVPAEIFPARLRSTCHGISSAAGKMGAIVGSFGFLY 468
>03_01_0357 - 2797523-2799109
Length = 528
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 478 SLVFCVLVDLFPTNLRVMAAALSLTAGRGGGLIGNLSFGY 359
S F V ++FP LR +S +G+ G +IG F Y
Sbjct: 422 STTFIVPAEIFPARLRSTCHGISAASGKAGAIIGAFGFLY 461
>03_01_0355 - 2789680-2791263
Length = 527
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 478 SLVFCVLVDLFPTNLRVMAAALSLTAGRGGGLIGNLSFGY 359
S F V +++P LR +S AG+ G +IG F Y
Sbjct: 422 STTFIVPAEIYPARLRSTCHGISAAAGKAGAIIGAFGFLY 461
>03_01_0354 + 2785998-2787623
Length = 541
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 469 FCVLVDLFPTNLRVMAAALSLTAGRGGGLIGNLSFGY 359
F V ++FP LR +S +G+ G +IG F Y
Sbjct: 426 FIVPAEIFPARLRSTCHGISAASGKAGAIIGAFGFLY 462
>10_08_0182 + 15513693-15515273
Length = 526
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 469 FCVLVDLFPTNLRVMAAALSLTAGRGGGLIGNLSFGY 359
F V +++P LR +S AG+ G ++G F Y
Sbjct: 427 FIVPAEIYPARLRSTCHGISAAAGKAGAIVGAFGFLY 463
>08_02_0493 -
17770723-17770758,17770772-17770996,17771051-17772033,
17772196-17772720,17772801-17772990
Length = 652
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 449 VPYKSQGNGCRVIADCWSRWR 387
+P GNG V+ DCW WR
Sbjct: 54 IPGGGHGNGFAVVWDCWPAWR 74
>01_06_0127 - 26718452-26718989,26719082-26720211
Length = 555
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 478 SLVFCVLVDLFPTNLRVMAAALSLTAGRGGGLI 380
S F + +LFPT +R A+S AG+ G ++
Sbjct: 426 STTFVLPAELFPTRVRSTCHAISAAAGKAGAIV 458
>06_02_0169 - 12535102-12536062,12536949-12537646
Length = 552
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 469 FCVLVDLFPTNLRVMAAALSLTAGRGGGLIGNLSF 365
F + +LFP R LS AG+ G L+G++ F
Sbjct: 423 FILPAELFPARFRSTCHGLSGAAGKLGALVGSIGF 457
>06_02_0166 + 12522172-12522890,12523567-12524596
Length = 582
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 469 FCVLVDLFPTNLRVMAAALSLTAGRGGGLIGNLSF 365
F + +LFP R LS AG+ G L+G++ F
Sbjct: 435 FILPAELFPARFRSTCHGLSGAAGKLGALVGSIGF 469
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 598 KIWHQAYERRGVARARWECRR 660
++W + +RR V R RW+ RR
Sbjct: 268 ELWRRCSQRRAVQRCRWQWRR 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,684,619
Number of Sequences: 37544
Number of extensions: 335509
Number of successful extensions: 1235
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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