Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e12r
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)                28   5.9  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         28   5.9  
SB_49379| Best HMM Match : FxsA (HMM E-Value=2.2)                      28   7.7  
SB_38761| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -3

Query: 332 NCCFLSIFIHCCYTLLLLAKDGTGSLGLNI 243
           N CF S   H C+TLL  AK    S G NI
Sbjct: 238 NVCFASSSYHFCFTLLSFAKLYVDSFGGNI 267


>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
          Length = 815

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 473 ETDGERGEGFKDTG--QYQILDGVLYVVQTDCHHSGETQTENQEKF 604
           +TD  R E  +  G  ++QI   +  +V T  HH G T+ E  +KF
Sbjct: 641 DTDVYRNEPLQRYGMLKWQIWRALRLIVDTGLHHRGMTRQEALQKF 686


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 485 ERGEGFKDTGQYQILDGVLYVVQTDCHH--SGETQTENQEK 601
           + GE F++  + + L   +  +QT+CHH  S  +  ++QEK
Sbjct: 39  DSGESFEEHEEIKSLKNEIVRLQTECHHWKSMSSNQDSQEK 79


>SB_49379| Best HMM Match : FxsA (HMM E-Value=2.2)
          Length = 261

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = -1

Query: 625 CVHKLGAK--FFLIFSLSFAGVVTVGLYYVQNSIQNLVLSC-IFEALTSLAISLVFCVLV 455
           C   +G K  +F+ F L FA    V +     S+   VL+  +  ++     + V   L 
Sbjct: 57  CSDFIGRKGTYFVFFGLGFALYAAVPVLGQLGSLALFVLAFGVILSMYGGGFATVPAYLA 116

Query: 454 DLFPTNLRVMAAALSLTAGRGGGLIGNLSFGYL 356
           DLF T +        LTA    G++G +   YL
Sbjct: 117 DLFGTQMVGAIHGRLLTAWAAAGVLGPVLVNYL 149


>SB_38761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 520 PNSGWSSVRSTNRLSPLRRNSN*KSRKIWHQA 615
           P     S+R   RL P++  SN  + + WH+A
Sbjct: 109 PYVAMDSIRYATRLRPMKNGSNRSTYQSWHKA 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,503,939
Number of Sequences: 59808
Number of extensions: 384084
Number of successful extensions: 1106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)