Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e12r
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.9  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 458 RRPVPYKSQGNGCRVIADCWSRWRSDRKPFVRLPYRL 348
           R P P        +++ DCW + R+ R  F  L   L
Sbjct: 856 RLPAPMDCPEAIYQLMLDCWQKERTHRPTFANLTQTL 892


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 324 FSQHFYSLLLYSASSCQRR 268
           FS H + +L+Y  S+C+ R
Sbjct: 507 FSFHQWGILVYEPSACRPR 525


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 499 ALTSLAISLVFCVL 458
           +LTSLA SL+F +L
Sbjct: 23  SLTSLASSLIFTIL 36


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 499 ALTSLAISLVFCVL 458
           +LTSLA SL+F +L
Sbjct: 23  SLTSLASSLIFTIL 36


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 499 ALTSLAISLVFCVL 458
           +LTSLA SL+F +L
Sbjct: 23  SLTSLASSLIFTIL 36


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 499 ALTSLAISLVFCVL 458
           +LTSLA SL+F +L
Sbjct: 23  SLTSLASSLIFTIL 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,634
Number of Sequences: 438
Number of extensions: 3877
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)