Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e12f
         (581 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.4  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   7.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 182 VRYEITLTRYMAKSLVGAYHRHRKRHLGMRVR 87
           V Y   L      +L+ +YH+ +  H G R R
Sbjct: 774 VDYTKPLVDAQTMNLLRSYHQQQSHHYGRRER 805


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 342 PLESQ*CRSCYRRRH 386
           P E   CR  +RRRH
Sbjct: 246 PFECDKCRGRFRRRH 260


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 512 ILIQPYGPLYQPSNPRNMN 456
           I   PYGP  QP++    N
Sbjct: 73  IQFMPYGPQQQPASVARRN 91


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,133
Number of Sequences: 336
Number of extensions: 3091
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)