Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e12f
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    42   7e-05
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    37   0.002
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    34   0.013
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    28   1.1  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.6  
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    27   2.6  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   3.5  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   4.6  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    25   6.1  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    25   6.1  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    25   6.1  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   6.1  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   6.1  
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo...    25   6.1  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   6.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.1  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    25   8.1  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   8.1  

>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = +2

Query: 266 AISATGFGRFHFCLLAVTGLIYANTAIGITIVSFVLPSAT-CDFRMTSAD--KGWLTAAP 436
           A++  GFGR+ + L  V G  + +  I     S +L      D     A+    +LT + 
Sbjct: 68  AMNEIGFGRYQWYLFFVAGFGWMSDNIWPVCTSLILMRLDEVDGPHPPAEGRAPYLTLSQ 127

Query: 437 MLGMVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIIS 550
            LG+++G+  W   ADT GR+     T L  GV  +I+
Sbjct: 128 NLGLLVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIA 165


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 23/84 (27%), Positives = 43/84 (51%)
 Frame = +2

Query: 314 VTGLIYANTAIGITIVSFVLPSATCDFRMTSADKGWLTAAPMLGMVIGSYFWGCLADTKG 493
           + GL++      I+    V+ ++     +T+  K ++T+A  LG ++G    G LAD  G
Sbjct: 96  IGGLLFGYDTGVISGALVVIGTSLGGHELTNGGKEFITSATSLGALLGGIIAGALADFFG 155

Query: 494 RKVVLVSTLLLDGVVGIISSFVQI 565
           RK V+     +  ++ I+ S VQ+
Sbjct: 156 RKPVIA----IASIIIIVGSIVQV 175


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
 Frame = +2

Query: 329 YANTAIGITIVSFVLPSATCDFRMTSADKGWLTAAPMLGMVIGSYFWGCLADTKGRKVVL 508
           Y    +G+ +   V+P ATC    +      +T +P+LG++     W  +A  +G K + 
Sbjct: 426 YLYLLMGVLVCPAVVP-ATCVMLFSRVSTIAVTVSPVLGIISSIITWLVVARAEGGKTLT 484

Query: 509 VST------LLLDGVVGIISSFVQIL 568
           + T      +L   VVG++S  + IL
Sbjct: 485 IETTGANNPMLAGNVVGLLSPALYIL 510


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/63 (23%), Positives = 33/63 (52%)
 Frame = +2

Query: 338 TAIGITIVSFVLPSATCDFRMTSADKGWLTAAPMLGMVIGSYFWGCLADTKGRKVVLVST 517
           +A+  T+++  +P+   +    S+   W+  A  L       F G +++  GRK+VL ++
Sbjct: 103 SALDQTVITTAIPTIVANLDGGSS-YSWIGTAYTLAQTSILPFCGIMSEVVGRKIVLYTS 161

Query: 518 LLL 526
           ++L
Sbjct: 162 IVL 164


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +2

Query: 341 AIGITIVSFVLPSATCDFRMTSADKGWLTAAPMLGMVIGSYFWGCLADTKGRKVVLVSTL 520
           A+  T+++  +P+   +    S+   W+  A  L       F G +++  GRK+VL +++
Sbjct: 104 ALDQTVITTAIPTIVANLDGGSS-YSWIGTAYSLAETSILPFCGIMSEVVGRKIVLYTSI 162

Query: 521 LL 526
           +L
Sbjct: 163 VL 164


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 459 EPMTIPNIGAAVSQPLSAEVMRKSHVADGSTNDTIVIPMAVL 334
           E  TIP      S+P   +VM  S VAD  T  +  IP  +L
Sbjct: 35  EEATIPQSLVKTSRPADHKVMEASKVADTRTAWSTKIPAVLL 76


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
 Frame = +2

Query: 296 HFCLLAVTGLI-----YANTAIG--ITIVSFVLPSATCDFRMTSADKGWLTAAPMLGMVI 454
           HF  +AV G+      Y + +IG  ITI+  + P  T   +    D G +     +G ++
Sbjct: 75  HFLNVAVAGVALMSDGYCSNSIGTVITILRKLYPEETTHNKSLQ-DIGMIA---YVGTIV 130

Query: 455 GSYFWGCLADTKGRK--------VVLVSTLLLDGVVG 541
           G   +G  +D  GRK        +++VST L  G  G
Sbjct: 131 GQLSFGWYSDRFGRKNGMITATIILIVSTALCTGAYG 167


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +2

Query: 437 MLGMVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIISSFVQILPIFM 580
           MLG  +G   W  +++  GRK  L   L L  V  I  +  Q +   M
Sbjct: 184 MLGYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIM 231


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 441 WVWSLVHISGVAWLIQRAVRLY 506
           W+W+ +H S + +  Q+ + LY
Sbjct: 114 WIWTCLHFSKIIFPAQKVICLY 135


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -3

Query: 537 TTPSSSRVDTNTTLRPFVSAKQPQKYEPMTIPNIGAAVSQPLSAEVMRKS 388
           T P +     +T +  F+SA   +K  PM I      + +P S  + R +
Sbjct: 49  TVPRTVLGGKSTNISKFISAPSTKKMSPMDISMDSPTILEPNSQGISRSA 98


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 441 WVWSLVHISGVAWLIQRAVRLY 506
           W+W+ +H S + +  Q+ + LY
Sbjct: 114 WIWTCLHFSKIIFPAQKVICLY 135


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 441 WVWSLVHISGVAWLIQRAVRLY 506
           W+W+ +H S + +  Q+ + LY
Sbjct: 86  WIWTCLHFSKIIFPAQKVICLY 107


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 140 LVGAYHRHRKRHLGMRVRHRGYRERRLGDRSKDAACCLLRLQCKKK 3
           LV     H    + +R+ H+G    RLG R+KD     + +  K K
Sbjct: 422 LVACQTNHAVDQILIRLLHQGASVMRLGSRTKDPEIAAVTIFQKAK 467


>SPAC9E9.14 |vps24||vacuolar sorting protein
           Vps24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 186 YFKSETPSENNRKW 227
           YF   TP E NRKW
Sbjct: 7   YFFGPTPQEQNRKW 20


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 441 WVWSLVHISGVAWLIQRAVRLY 506
           W+W+ +H S + +  Q+ + LY
Sbjct: 114 WIWTCLHFSKIIFPAQKVICLY 135


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -3

Query: 537 TTPSSSRVDTNTTLRPFVSAKQPQKYEPMTIPNIGAAVSQPLSAEVMRKSHVADGSTN 364
           T P+S+RV T T      S KQP      T     ++VS P S+ V  +S     S++
Sbjct: 437 TQPASTRVQTTTVSSISTSVKQP------TASVASSSVSVPSSSSVQPQSSTPISSSS 488


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -3

Query: 534 TPSSSRVDTNTTLRPFVSAKQPQKYEPMTIPNIGAAVSQPLSAEVMRKS 388
           TPSS +  T    RPFV     Q    + I NI   +      +++R S
Sbjct: 114 TPSSEKSTTERESRPFVPPNSQQMRRMLFIGNIPKELDDFWMDKILRLS 162


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 21/90 (23%), Positives = 41/90 (45%)
 Frame = +2

Query: 242 EHGADFEAAISATGFGRFHFCLLAVTGLIYANTAIGITIVSFVLPSATCDFRMTSADKGW 421
           E+G  FEA   ++        +  ++GL++     G+   +  +  +     ++S  K  
Sbjct: 67  ENGEGFEAEKISSWIWVLS-AVAGISGLLFGYDT-GVISGALAVLGSDLGHVLSSGQKEL 124

Query: 422 LTAAPMLGMVIGSYFWGCLADTKGRKVVLV 511
           +T+A     +I +   G LAD  GRK +L+
Sbjct: 125 ITSATSFAALISATTSGWLADWVGRKRLLL 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,124
Number of Sequences: 5004
Number of extensions: 51136
Number of successful extensions: 147
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)