Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10e12f
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5) 36 0.032
SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05) 35 0.056
SB_31704| Best HMM Match : MFS_1 (HMM E-Value=0.024) 34 0.097
SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15) 32 0.39
SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61) 31 0.69
SB_26344| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042) 30 1.2
SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034) 30 1.2
SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015) 30 1.2
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_55040| Best HMM Match : TatC (HMM E-Value=0.59) 29 2.1
SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11) 29 2.8
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 28 4.8
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3) 28 4.8
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_53613| Best HMM Match : Sugar_tr (HMM E-Value=0.00012) 28 6.4
SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06) 28 6.4
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04) 27 8.5
SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7) 27 8.5
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_17091| Best HMM Match : DUF931 (HMM E-Value=8.3) 27 8.5
>SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)
Length = 563
Score = 35.5 bits (78), Expect = 0.032
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +2
Query: 260 EAAISATGFGRFHFCLLAVTGLIYANTAIGITIVSFVLPSATCDFRMTSADKGWLTAAPM 439
E AI G+G F LL + G + ++ ITI++ + P+ C++ +++ + +T +
Sbjct: 53 EDAIDRLGYGLFQIKLLLMIGFAWMADSMEITILAIMCPAIRCEWNLSTWAEALITTVTL 112
Query: 440 L 442
L
Sbjct: 113 L 113
>SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05)
Length = 457
Score = 34.7 bits (76), Expect = 0.056
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +2
Query: 410 DKGWLTAAPM----LGMVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIISSFVQILPIF 577
D+G+L A +GM+IGS G ++D GRK L + L GV G+ S+ V + F
Sbjct: 71 DRGYLGATLQSCFFVGMLIGSLVCGVISDAWGRKKCLFISYTLLGVAGVGSACVDCVSFF 130
>SB_31704| Best HMM Match : MFS_1 (HMM E-Value=0.024)
Length = 625
Score = 33.9 bits (74), Expect = 0.097
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Frame = +2
Query: 236 FLEHGADFEAAISATGFGRFHFCLLAVTGLIYANTAIGITIVSFVLPSATCDFRMTSADK 415
FL F+ +I GFG +F + T+ IT L + D S +
Sbjct: 33 FLASLIAFQFSILVFGFGTPNFSCTTPANVTCEITSAAIT----ALGTRLLDPSRASCLR 88
Query: 416 GWLTAAPMLGMVIGSYFWGCLADTKGRK---VVLVSTLLLDGVVGIISSFVQIL 568
+ + GM++GS+ G ++D GRK V +TL+L V ++ V L
Sbjct: 89 ALVQSMFFAGMLVGSFVSGPVSDIYGRKCCSFVFTATLILGAAVSVVVDCVSFL 142
>SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15)
Length = 839
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 413 KGWLTAAPMLGMVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIISSFVQILPIFM 580
K A M G+++GS + ++D GR++ + ++ L V G S F L +F+
Sbjct: 118 KALTQAMYMAGLLVGSLVFSAVSDRFGRRIGVFISIALLAVCGTTSGFSNCLSLFI 173
>SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)
Length = 375
Score = 31.1 bits (67), Expect = 0.69
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -1
Query: 176 YEITLTRYMAKSLVGAYHRHRKRHLGMRVRHRGYRERRLGDRSKDAACCLLRLQC 12
Y+ +T Y K G +H HR++H R H + RRL + K C + +++C
Sbjct: 205 YKNKMTCYKEKREQGRHHGHRRKH--HRPHHHRHHHRRLPEYLK--KCMIEKVKC 255
>SB_26344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 392 FRMTSADKGWLTAAPMLGMVIGSYFWGCLADTKGRKVVLV 511
F + A G+ A+ +LG IG++ G L D GR+ VL+
Sbjct: 32 FNSSEAALGFEVASMLLGCAIGAFLAGWLGDRLGRRGVLI 71
>SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042)
Length = 277
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 440 LGMVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIISSFV 559
+G + GS+ G ++D GRK+ L ++ L I +SFV
Sbjct: 154 VGYLFGSFLSGTVSDAFGRKITLTVSVALQAAAFIGASFV 193
>SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)
Length = 363
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 440 LGMVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIISSFV 559
+G + GS+ G ++D GRK+ L ++ L I +SFV
Sbjct: 157 VGYLFGSFLSGTVSDAFGRKITLTVSVALQAAAFIGASFV 196
>SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015)
Length = 292
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 428 AAPMLGMVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIISSFVQILPIF 577
A M G+++GS + ++D GR++ + ++ L GI+S L +F
Sbjct: 4 AVYMAGLLVGSVTFSSISDHFGRRLSMFLSIFLMAACGIVSGVSDCLSMF 53
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 323 LIYANTAIGITIVSFVLPSATCDFRMTSADKGWLTAAP 436
+IY NT+ G+ + + ATC R T A KG++ A P
Sbjct: 378 IIYDNTSYGVCVPNPCANGATCRKR-TGASKGFICACP 414
>SB_55040| Best HMM Match : TatC (HMM E-Value=0.59)
Length = 275
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 443 GMVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIISSFVQILPIF 577
GM+IGS G ++D GRK + L V G+ FV + F
Sbjct: 121 GMLIGSLVSGLISDAWGRKKCFYLSYALMVVAGVSCVFVDCISFF 165
>SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11)
Length = 302
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 440 LGMVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIISSFV 559
+G + GS G L+D GRK+ L ++ L I +SFV
Sbjct: 63 VGYLFGSLLSGTLSDAFGRKISLTVSVALQAAAFIGASFV 102
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 52 RSPRRRSLYPRWRTRIPKCRLR 117
RSPR+RS PR R+R P+ R R
Sbjct: 209 RSPRKRSRTPRKRSRSPRKRSR 230
>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
Length = 509
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 422 LTAAPMLGMVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIISSFVQILPIF 577
L A GMV+GS G L+D GRK + + ++ + SSFV F
Sbjct: 104 LQACDFSGMVLGSLISGNLSDRLGRKKWCLYSAIILLISSTSSSFVDCPSFF 155
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 263 AAISATGFGRFHFCLLAVTGLIYANTAIGITIV 361
A +S G+G HFC +A G + I + IV
Sbjct: 2584 AGLSTEGYGNNHFCWMATDGTLIWTFTIPVMIV 2616
>SB_53613| Best HMM Match : Sugar_tr (HMM E-Value=0.00012)
Length = 466
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 422 LTAAPMLGMVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIISSFVQILPIF 577
L + +GM+ GS+ G ++D GRK L + G+ S+ V + F
Sbjct: 113 LQSVYFIGMLFGSFLTGMVSDAWGRKNCLFLFTGIMLAAGVASALVDCVSFF 164
>SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)
Length = 624
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 443 GMVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIISSFVQILPI 574
GM +GS G ++D GR++ + + + + G+ +SF L +
Sbjct: 66 GMAVGSLLGGLISDAFGRRLCMFLSCGILVISGVAASFADCLSL 109
>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
Length = 544
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 419 WLTAAPML-GMVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIISSFV 559
W T + M G + G+ +G L+D GR+ VL + + V SSFV
Sbjct: 94 WATNSIMFTGWLFGNIVFGILSDKYGRRKVLFISSCMVCWVAFASSFV 141
>SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)
Length = 608
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/56 (21%), Positives = 28/56 (50%)
Frame = +2
Query: 266 AISATGFGRFHFCLLAVTGLIYANTAIGITIVSFVLPSATCDFRMTSADKGWLTAA 433
A+ + G+G + L ++ A+ IT++S ++P C++ ++ +T A
Sbjct: 90 AVESAGYGWYQLRLGIISSFQRVADAMEITMLSILVPYVKCEWDLSIVQVAMITTA 145
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = -2
Query: 454 NDHTQHRRGCKPALVRRSHAEITCRRR*HERHYCDSNGGVSVDQPRDRKQAKVEATETRS 275
ND T+ R KP +RRS + + R R S G + R + + +RS
Sbjct: 621 NDPTRGRHIFKPGSLRRSRSRTSLSSRSRSRDRGGSRRGKRRSRSRSSSYSSRSRSRSRS 680
Query: 274 RNGG 263
R+ G
Sbjct: 681 RDRG 684
>SB_17091| Best HMM Match : DUF931 (HMM E-Value=8.3)
Length = 193
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 446 MVIGSYFWGCLADTKGRKVVLVSTLLLDGVVGIISSFVQI 565
+V+G + G L G VV+V +L+ VVG++ FV I
Sbjct: 117 VVVGVFVVGALVVVVGLIVVVVVNVLVVVVVGVVVVFVDI 156
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,428,760
Number of Sequences: 59808
Number of extensions: 422021
Number of successful extensions: 1236
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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