Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e10r
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.0  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   9.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   9.2  

>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 412 RSASTSQRDCYYPLLDEKLISNKFDKEYIID 504
           ++ +++  +C YP+ DEK +   + K+Y ID
Sbjct: 57  KACASNNLECTYPVKDEKEMD--YSKDYFID 85


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 490 PYQIYLRLASRLTVGSSNRVAMWMRSGSLTSSEI-KISI 377
           PYQ++ +  SRL +G S+++ +     S  ++E+ KIS+
Sbjct: 216 PYQLFWQSESRLVIGWSDQIMIVSIQRSNVANELPKISL 254


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -2

Query: 379 ILSNI*ATKKSSTLFFFFLMN 317
           I++ + A K+S ++F+FFL+N
Sbjct: 337 IVNGVLADKESRSIFYFFLLN 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,942
Number of Sequences: 5004
Number of extensions: 51484
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)