Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e08r
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)            227   1e-59
SB_34106| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-10)        31   1.3  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_32093| Best HMM Match : MCM (HMM E-Value=0.004)                     28   6.9  
SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_23964| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)               28   9.1  
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.1  

>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score =  227 bits (554), Expect = 1e-59
 Identities = 106/149 (71%), Positives = 128/149 (85%)
 Frame = -3

Query: 739 TTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNYHLLE 560
           TTP AD+ILI    LVIPDLY+NAGGVTVS+FEWLKN+NHVS+GRLT+KYE+ESNYHLLE
Sbjct: 372 TTPEADQILIANKQLVIPDLYLNAGGVTVSYFEWLKNINHVSFGRLTWKYEKESNYHLLE 431

Query: 559 SVQESLERRFGRVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMRF 380
           SVQ+SLER FG     IP+TPSE+FQ++ISGASE+DIVHSGL++TMERSA+ IM+ A  +
Sbjct: 432 SVQKSLERHFGG-SSHIPITPSEAFQEQISGASERDIVHSGLEFTMERSAKQIMRCAEEY 490

Query: 379 NLGLDLRTAAYANSIEKIFTTYADAGLAF 293
           NLGLD+RTAAY  +IEK++ TYA AG  F
Sbjct: 491 NLGLDIRTAAYIVAIEKVYNTYAVAGFTF 519


>SB_34106| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-10)
          Length = 262

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 354 PRMRTPSKRYSPRMPMPV*LSNNSLTEYQF*SIVCIVFSEE 232
           P+ RTP KR     P P  LSN   T+  + +++  +  EE
Sbjct: 103 PKKRTPEKRIQKSDPSPGILSNEDFTDLDYNTMMASLIGEE 143


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 377  PRFRS--EDSRVCELHRKDIHHVCRCRSSFLIIHLLN 273
            P FR+  E++ VC++H    ++ C C  +F  IH  N
Sbjct: 2050 PCFRNPCENNGVCKIHPVHFNYTCNCTDTFTGIHCEN 2086


>SB_32093| Best HMM Match : MCM (HMM E-Value=0.004)
          Length = 348

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 389 GCLHDGPSGSLHGVVESGVHDVLLGGAGDSLLEGL*GSDGDAASHATEPPLERLLDRFQQ 568
           GC  +  +G +HG  +    D   G  GD  ++   G D D  ++  +PPL  +L ++ Q
Sbjct: 168 GCDDNDDNGEIHGDTQKYTDDDSGGDDGDGGVDDGNGGDYDDDNN-DDPPLSSVLRQYYQ 226


>SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 389 GCLHDGPSGSLHGVVESGVHDVLLGGAGDSLLEGL*GSDGDAASHATEPPLERLLDRFQQ 568
           GC  +  +G +HG  +    D   G  GD  ++   G D D  ++  +PPL  +L ++ Q
Sbjct: 183 GCDDNDDNGEIHGDTQKYTDDDSGGDDGDGGVDDGNGGDYDDDNN-DDPPLSSVLRQYYQ 241


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 467 RLREGHRALRTRLHHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKD 327
           R R+G  + R +  H   R   HE+  + + RFR  D +  +L R+D
Sbjct: 330 RHRDGRESWREKPKH---RRRSHEEREQRRDRFRDRDEKGSDLERRD 373


>SB_23964| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)
          Length = 1482

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 629 VLEPLEE*DGDTTSVDVEVGDHENVAIDEDLV 724
           +L+ +++ DGDT   DV+V D + +  D D+V
Sbjct: 848 LLDDVDDVDGDTLLDDVDVVDEDTLLADVDVV 879


>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = -2

Query: 506  RHSLRVLPEENLRRLREGHRALRTRLH-HGEIR*GHHEDSHEV-QPRFRSEDSRVCELHR 333
            R  LR   + +  RL + H A R RLH   E       D HEV + R R     +C    
Sbjct: 831  RKRLRDRHKASRIRLHDKHEASRNRLHDRHEASRNRLRDRHEVSRKRLRDRHKALCN-RL 889

Query: 332  KDIHHVCRCR 303
             D H V R R
Sbjct: 890  CDRHEVSRKR 899


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,186,380
Number of Sequences: 59808
Number of extensions: 471828
Number of successful extensions: 1437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)