Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e08r
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.99 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.0  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 616 SYGRLTFKYERESNYHLLESVQESL 542
           S  +L    E E NY+LLE + E+L
Sbjct: 104 SLEKLLCNVEAEENYNLLEDIYETL 128


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 335 RKDIHHVCRCRS-SFLIIHLLNTNFKVLSV*YFLRNSRVDRRFNPI-FISFIL 183
           RK +   C  +  SFL   L N    ++S  Y ++  ++   FN   FI F +
Sbjct: 660 RKQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFNESKFIGFTM 712


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 335 RKDIHHVCRCRS-SFLIIHLLNTNFKVLSV*YFLRNSRVDRRFNPI-FISFIL 183
           RK +   C  +  SFL   L N    ++S  Y ++  ++   FN   FI F +
Sbjct: 750 RKQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFNESKFIGFTM 802


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,076
Number of Sequences: 438
Number of extensions: 4796
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)