Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10e08r
(741 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi... 57 1e-08
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil... 56 2e-08
At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi... 56 3e-08
At5g20370.1 68418.m02423 serine-rich protein-related contains so... 30 1.9
At4g28080.1 68417.m04027 expressed protein 29 3.2
At1g02120.1 68414.m00138 GRAM domain-containing protein-related ... 29 4.3
At2g32800.1 68415.m04015 protein kinase family protein contains ... 28 7.5
At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608... 27 9.9
At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608... 27 9.9
>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
thaliana] SWISS-PROT:Q38946
Length = 411
Score = 57.2 bits (132), Expect = 1e-08
Identities = 21/38 (55%), Positives = 32/38 (84%)
Frame = -3
Query: 739 TTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNL 626
T P AD+IL + ++++PD+Y NAGGVTVS+FEW++N+
Sbjct: 315 TDPDADEILSKKGVIILPDIYANAGGVTVSYFEWVQNI 352
>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 56.0 bits (129), Expect = 2e-08
Identities = 20/38 (52%), Positives = 32/38 (84%)
Frame = -3
Query: 739 TTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNL 626
T P AD+IL + ++++PD+Y N+GGVTVS+FEW++N+
Sbjct: 315 TDPEADEILKKKGVMILPDIYANSGGVTVSYFEWVQNI 352
>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 55.6 bits (128), Expect = 3e-08
Identities = 20/38 (52%), Positives = 32/38 (84%)
Frame = -3
Query: 739 TTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNL 626
T P AD+IL + ++++PD+Y N+GGVTVS+FEW++N+
Sbjct: 315 TDPDADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 352
>At5g20370.1 68418.m02423 serine-rich protein-related contains some
similarity to serine-rich proteins
Length = 175
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = -3
Query: 490 SFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMRFNLGLDLRTAAYANSIEKIFTTYA 311
SF +R+ K + S T++R+ R +R N+GL+LR A NS+ KI + A
Sbjct: 85 SFHRRLEHEKSKTLASS----TVKRNNRG--DNTIRVNVGLNLRKLALMNSLAKIGSVEA 138
Query: 310 D 308
+
Sbjct: 139 E 139
>At4g28080.1 68417.m04027 expressed protein
Length = 1660
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +1
Query: 163 VVISLYCKMKEINIGLNLRST---LEFLRKYYTDNTL 264
V + Y ++KE G +L+S +E RKYYTD L
Sbjct: 502 VTETAYQRLKESETGFHLKSPKELIEMARKYYTDTAL 538
>At1g02120.1 68414.m00138 GRAM domain-containing protein-related
contains low similarity to PF02893: GRAM domain
Length = 556
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 491 VLPEENLRRLREGHRALRTRLHHGE 417
++ E+ L+R+R+ H AL+ + HH E
Sbjct: 524 MMVEDRLQRMRQDHAALKAQFHHLE 548
>At2g32800.1 68415.m04015 protein kinase family protein contains
dual protein kinase domains, Pfam:PF00069
Length = 851
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 589 ERESNYHLLESVQESLERRFG--RVGGRIPVTPSESFQKRISGASEKDIVHSGL 434
E +S+Y + S + R R+GG I P ESF+K+ ++ D+ G+
Sbjct: 281 EHDSSYDSVSSFRNHQFRVADSTRIGGTIGYLPPESFRKKTVATAKTDVFSFGV 334
>At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608:
Protein of unknown function (DUF778)
Length = 231
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = -2
Query: 458 EGHRALRTRLHHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHHVCRCRSSFLIIHL 279
E R+ + + +GE R EDSHE +P + + + ++ +++ C + +
Sbjct: 90 ESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNILTCNCHSFVANN 149
Query: 278 LN 273
LN
Sbjct: 150 LN 151
>At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608:
Protein of unknown function (DUF778)
Length = 231
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = -2
Query: 458 EGHRALRTRLHHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHHVCRCRSSFLIIHL 279
E R+ + + +GE R EDSHE +P + + + ++ +++ C + +
Sbjct: 90 ESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNILTCNCHSFVANN 149
Query: 278 LN 273
LN
Sbjct: 150 LN 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,407,722
Number of Sequences: 28952
Number of extensions: 322230
Number of successful extensions: 740
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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