Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e08f
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)             95   4e-20
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.026
SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08)       36   0.026
SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)                      35   0.045
SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)               34   0.10 
SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               32   0.32 
SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               32   0.32 
SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)           29   2.2  
SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_58319| Best HMM Match : Herpes_BFRF1 (HMM E-Value=3.6)              27   9.0  
SB_3223| Best HMM Match : Ion_trans (HMM E-Value=0)                    27   9.0  
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
 Frame = +2

Query: 308 IPTSANPKFFHMVEYFFHRACQVVEDKLVE--DLKSRTP--IEEKKKKVAGILKLMEPCD 475
           + +   P F  M   FF +A   VE +L+   D   + P   E+KK ++ GIL +M+PC 
Sbjct: 38  VESDTEPSFTEMCAGFFDQARTYVEHRLLTRPDPPGKIPEKFEDKKHRIKGILDVMKPCQ 97

Query: 476 HILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 604
            +L + FP++ D+G+Y+++ GYRAQHS HR+P KGGIR+S DV
Sbjct: 98  DVLSVVFPIKLDNGEYKLVQGYRAQHSHHRSPCKGGIRYSEDV 140


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 455 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 604
           +++EP + +L  + P   D G+ ++  GYR + ++   P KGG+RF   V
Sbjct: 379 RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSV 427


>SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08)
          Length = 131

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 455 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 604
           +++EP + +L  + P   D G+ ++  GYR + ++   P KGG+RF   V
Sbjct: 71  RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSV 119


>SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)
          Length = 582

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
 Frame = +2

Query: 269 TYASHEIPDKLKDIPTSANPKFFHMVEYFFHR--ACQVVEDKLVEDLKSRTPIEEKKKKV 442
           TY+  E+ D L++  +S     FH+  +  HR     +++ + V+D K +TP  E KK  
Sbjct: 334 TYSQSELMD-LRNNSSSLTD--FHI--FCLHRWLPANLLKPEAVKDAKKQTPDLEFKKWT 388

Query: 443 AGILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRT 568
            GIL        I E+  PL+R+  +      Y+AQ   H T
Sbjct: 389 KGILDHAGTVSAISEVIEPLKRNLTELFKAQDYQAQPLDHLT 430


>SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)
          Length = 312

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 200 SVQNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSA 322
           +V  +A+NT   ++   +N CCRT  +  I    K +PT A
Sbjct: 251 TVPTKAINTCKTVLTKAINTCCRTVPTKAINTCCKTVPTKA 291


>SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 448

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +2

Query: 443 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 604
           A IL +++EP + ++  + P R DS +  +  G+R + ++   P KGG+RF   V
Sbjct: 47  ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTV 100


>SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 486

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +2

Query: 443 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDV 604
           A IL +++EP + ++  + P R DS +  +  G+R + ++   P KGG+RF   V
Sbjct: 85  ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTV 138


>SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 370 TGSVEKIFYHVEELRIRTCRNIFELIWNLMTSVCAAADIHSSWYDSEHCIEGF 212
           TG+V   +YH  +L I +  NI    W     VC   D   ++Y S++ I+ F
Sbjct: 203 TGAVYTDYYHDSDLTIGSVLNI----WGRKFQVCDCDDFTKAYYKSKYGIDSF 251


>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = +1

Query: 343 GRIFFPPSLSSCRRQAC*RFEVKDTH*RE-EKESSRYSKTYGTMRSHS*DSISSEARFWR 519
           GR F P S++   RQ   R+E      RE E E     K     +      +    +F R
Sbjct: 214 GRDFGPHSINVHERQCAKRWEANKKQQREIEDEKKAREKKREPWKEPVFPPLRRHEQFTR 273

Query: 520 LRNDIRLSRTTFHTQDSNQRRYSI 591
             +DIR  R + H +   +  YS+
Sbjct: 274 SLHDIRAKRDSLHLEFEKELLYSL 297


>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +1

Query: 301 QRYSYKCESEVLPHGRIFFPPSLSSC 378
           QR  YK  SE   HGR  FP SL  C
Sbjct: 163 QRVGYKVSSEAHIHGRQSFPLSLDHC 188


>SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)
          Length = 889

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 608 WLRPLRIEYLLWLESCVWNVVRDSLISFRN--RQNRASEEIESQ 483
           WL  L I  LLW   CV+ ++RDS    ++       S EI+S+
Sbjct: 422 WLCLLTISLLLWQPLCVYTLLRDSHTMLKSPLASQLGSREIDSR 465


>SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +2

Query: 191 LKNSVQNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRAC 370
           +K    N+   T+  I+P  +    RTY      DK+ +IP+     F  + E  F    
Sbjct: 194 MKRFGDNDLYTTLGYILPTHLLSMARTYEKRRKMDKVTEIPS-----FLALDELEFFEPF 248

Query: 371 QVV---EDKLVEDLKS 409
            V+   +D  V DLKS
Sbjct: 249 PVIDGNDDVFVHDLKS 264


>SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 158 DAAWWLIMLSTTIGLGIGSPYT 93
           DA WW ++  TT+G G   P T
Sbjct: 462 DAFWWAVVTMTTVGYGDMRPIT 483


>SB_58319| Best HMM Match : Herpes_BFRF1 (HMM E-Value=3.6)
          Length = 316

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 326 PKFFHMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPC 472
           P FF   E +  +   V+ ++ V D  S+ P+EEK  ++    K  E C
Sbjct: 90  PSFFEEREGYGPKVIDVIAER-VNDACSKKPLEEKLNELQNKYKTPENC 137


>SB_3223| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 486

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 158 DAAWWLIMLSTTIGLGIGSPYT 93
           DA WW ++  TT+G G   P T
Sbjct: 368 DAFWWAVVTMTTVGYGDMYPVT 389


>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 149  WWLIMLSTTIGLGIGSPYTY 90
            WW I+  TT+G G  SP T+
Sbjct: 1976 WWAIITMTTVGYGDVSPKTW 1995


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,394,160
Number of Sequences: 59808
Number of extensions: 391545
Number of successful extensions: 860
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)