Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e06r
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0810 - 21674710-21674960,21675318-21675405,21675739-216759...    28   6.9  

>07_03_0810 -
           21674710-21674960,21675318-21675405,21675739-21675990,
           21676521-21676685,21677358-21678494
          Length = 630

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 56  TYLTPGYLFIGFQKFIYTKIITLHIVT 136
           T +TP  L +G     YTKI+TLH+VT
Sbjct: 379 TGVTP--LMVGITGLPYTKILTLHLVT 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,977,795
Number of Sequences: 37544
Number of extensions: 209225
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)