Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e06r
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit...    27   10.0 

>At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit
           family protein similar to SP|P39007 Oligosaccharyl
           transferase STT3 subunit {Saccharomyces cerevisiae};
           contains Pfam profile PF02516: Oligosaccharyl
           transferase STT3 subunit
          Length = 779

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = -3

Query: 255 KYFWCFIVVFAVHILDVFFLINGNILKKKLYDINVISLIRVTM*SVIIFV 106
           ++F  F+V   +H++ + + I G IL  K++ + V  ++ + M  V+ F+
Sbjct: 271 EHFASFLVFIIIHVVALVYYIKG-ILSPKMFKVAVTLVVSIGM--VVCFI 317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,034,319
Number of Sequences: 28952
Number of extensions: 193161
Number of successful extensions: 434
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)