Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e04r
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07330.1 68418.m00837 expressed protein                             28   7.5  
At3g23430.1 68416.m02953 phosphate transporter, putative (PHO1) ...    28   7.5  
At1g68980.1 68414.m07894 pentatricopeptide (PPR) repeat-containi...    27   9.9  
At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase...    27   9.9  
At1g55610.1 68414.m06365 protein kinase family protein contains ...    27   9.9  

>At5g07330.1 68418.m00837 expressed protein 
          Length = 165

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 164 FVHNYISSGMINLIIIKFYHKTYLHVHKN 250
           F   Y+S G+I+L +    +  YLH+H+N
Sbjct: 54  FTPVYVSIGLISLSVTFGVYTAYLHLHEN 82


>At3g23430.1 68416.m02953 phosphate transporter, putative (PHO1)
           identical to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; supporting cDNA gi|20069031|gb|AF474076.1|;
           contains Pfam profiles PF03124: EXS family and PF03105:
           SPX domain
          Length = 782

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 486 LHNFCYFCPFILWKNVNIIYSW 551
           LH F Y C   +WKN  I Y++
Sbjct: 437 LHMFMYGCNLYMWKNTRINYTF 458


>At1g68980.1 68414.m07894 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 619

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 167 VHNYISSGMINLIIIKFYHKTYLHVHKNNCIFIYLQNGYI 286
           +H +  SG +      F   T+L    NN  ++ L NGY+
Sbjct: 480 IHAFCKSGRLGDAKSTFRRMTFLQYEPNNQTYLSLINGYV 519


>At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase 5 [Lycopersicon
           esculentum] GI:2459817; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 397

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 395 SWLRHQNAFIYRIHFIA**LFNFSVQFL 312
           SW RH N F+ R+ F+   + N S   L
Sbjct: 283 SWPRHSNGFVERVRFLGAIMVNVSYPIL 310


>At1g55610.1 68414.m06365 protein kinase family protein contains
           Prosite:PS00107: Protein kinases ATP-binding region
           signature
          Length = 1166

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 170 HNYISSGMINLIIIKFYHKTYLHVHKNN 253
           +NY+S   +N ++ K    TYL+V  NN
Sbjct: 335 NNYLSGDFLNTVVSKITGITYLYVAYNN 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,056,476
Number of Sequences: 28952
Number of extensions: 301073
Number of successful extensions: 553
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)