Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10e04f
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 105 2e-23
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 48 9e-06
04_04_1111 - 30979334-30979479,30979769-30979866,30980364-309804... 46 2e-05
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 45 6e-05
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 43 2e-04
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 42 6e-04
02_05_0835 - 32099966-32100111,32100418-32100465,32100673-321007... 41 0.001
07_03_0808 - 21668100-21669092 28 7.5
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 28 7.5
01_06_0049 - 25953811-25954131,25954223-25954903 27 9.9
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 105 bits (253), Expect = 2e-23
Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Frame = +2
Query: 326 ILKKGD-LAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADVXXXXXXXXXXXXXXXKPG 502
I +KGD + D+G HIDGFIAVVAHT V+ + V+G+AADV +PG
Sbjct: 51 ICEKGDSYIRDDMGCHIDGFIAVVAHTHVIHDGAVTGKAADVLAAANTAAEVALRLVRPG 110
Query: 503 TENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSII 628
+N VTEAIQK++A Y CK +EG+LSHQLKQF IDG K ++
Sbjct: 111 KKNKDVTEAIQKVAAAYDCKIVEGVLSHQLKQFVIDGNKVVL 152
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +2
Query: 32 EMADEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEE 208
E+ +EKE++ + ++ VVTKYK A I+N L+ V++ C P A +ICE GD + ++
Sbjct: 6 EVREEKELDLSSSD--VVTKYKDAADIINNALKLVVSLCKPKAKIVDICEKGDSYIRDD 62
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 47.6 bits (108), Expect = 9e-06
Identities = 31/102 (30%), Positives = 51/102 (50%)
Frame = +2
Query: 101 AGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVN 280
A ++ +V + + + P ++CE LE + KE + GIAF T S+N
Sbjct: 246 AAEVHRQVRKHMRSILKPGMLMIDLCE-----TLENMVRKLIKENGLQAGIAFPTGCSLN 300
Query: 281 NCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 406
H++P + + +L+ D+ K+D G HIDG+I A TV
Sbjct: 301 WVAAHWTPNSGDKT-VLQYDDVMKLDFGTHIDGYIVDCAFTV 341
>04_04_1111 -
30979334-30979479,30979769-30979866,30980364-30980443,
30980685-30980756,30980860-30980901,30981009-30981170,
30981276-30981427,30981453-30981538,30981654-30981726,
30982706-30982889
Length = 364
Score = 46.4 bits (105), Expect = 2e-05
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Frame = +2
Query: 38 ADEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNK 217
A E E + + + + K A ++ RVLE P + EI + K++++
Sbjct: 128 ASEIASEIQMHDKVSIIHMKAACELAARVLEYAGTLVKPSVTTDEIDKAVHKMIIDAGAY 187
Query: 218 VFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVA 397
G S C SVN CICH P + E L+ GD+ ID+ +++G+ +
Sbjct: 188 ---PSPLGYGGFPKSVCTSVNECICHGIPDSRE----LQDGDIINIDVTVYLNGYHGDTS 240
Query: 398 HTVVVGE-SEVSGRAADV 448
T + GE E S R V
Sbjct: 241 KTFLCGEVDEASKRLVKV 258
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +2
Query: 200 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 379
LE + KE + GIAF T S+N H++P + +L+ D+ K+D G HI+G
Sbjct: 218 LENMVRKLIKENGLEAGIAFPTGCSLNCVAAHWTPNGGDKT-VLQYDDVMKLDFGTHING 276
Query: 380 FIAVVAHTV 406
+I A TV
Sbjct: 277 YIVDSAFTV 285
>07_03_0151 -
14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +2
Query: 248 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEV 427
G S C SVN CICH P +L+ GD+ ID+ +++G+ + T + GE +
Sbjct: 465 GFPKSVCTSVNECICHGIP----DSRVLQNGDIINIDVTVYLNGYHGDTSRTYLCGEVDE 520
Query: 428 S 430
S
Sbjct: 521 S 521
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 248 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEV 427
G S C S+N C+CH P +++ L+ GD+ +D+ ++G+ + T V GE +
Sbjct: 154 GFPKSICTSLNECVCHGVPDSTQ----LQTGDIMNVDVNVFLNGYHGGASRTFVCGEVDD 209
Query: 428 SGR 436
S R
Sbjct: 210 SIR 212
>02_05_0835 -
32099966-32100111,32100418-32100465,32100673-32100770,
32101269-32101348,32101615-32101686,32102260-32102301,
32102382-32102543,32102971-32103199,32103681-32103747,
32103907-32104003
Length = 346
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/117 (25%), Positives = 48/117 (41%)
Frame = +2
Query: 248 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEV 427
G S C SVN CICH P S P L+ GD+ ID+ +++G+ + T + G V
Sbjct: 161 GFPKSVCTSVNECICHGIP-DSRP---LEDGDIINIDVTVYLNGYHGDTSATFLCG--NV 214
Query: 428 SGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQ 598
+A + PG E + IQ + ++ + + H + Q
Sbjct: 215 DDKAKKLVQVTRECLDKAISICAPGVEIKRIGRTIQDHADKFKFGVVRQFVGHGVGQ 271
>07_03_0808 - 21668100-21669092
Length = 330
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 201 NTSLSPNSHISLADASGTHFAMTCSRTRFTICPA 100
+ S P+S S + A+G F TC TR++ P+
Sbjct: 172 SASPRPSSPESFSSATGARFRSTCFSTRYSAIPS 205
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 326 ILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGR 436
++ +LA DLG +DG +AV A V+ ++E R
Sbjct: 447 VVPDDNLAAGDLGDELDGIVAVTADAEVLDDAERGAR 483
>01_06_0049 - 25953811-25954131,25954223-25954903
Length = 333
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 249 PFLESFSFLKTLLVSSNTSLSPNSHISLAD 160
PF SF F ++++ SLSP+S SL D
Sbjct: 45 PFSPSFGFSSPSPLATSVSLSPSSSASLVD 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,038,539
Number of Sequences: 37544
Number of extensions: 311548
Number of successful extensions: 855
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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