Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e03r
         (634 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    25   0.40 
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    24   0.92 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   4.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   6.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   6.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   6.5  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 347 LGYYDTLLDNSTLLDIW 397
           L YY T  D +T+LD W
Sbjct: 310 LAYYSTTCDIATILDFW 326


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 280 LHKLELIVTNKENCRNQYKDHDRVVTDHKFCAGLVRD 170
           LH + L+       + +YKD ++ +   K   GL+RD
Sbjct: 119 LHTIFLVCNVLTVFKIRYKDLNKALESSKISVGLIRD 155


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 294 ALPP*TVVPHPSRSTKI 344
           ALPP   +P P RS+ I
Sbjct: 70  ALPPKREIPSPKRSSPI 86


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = -1

Query: 607 TNYHYLSTATCFHGEFYDPAYRRI 536
           T  HY      + GE Y+P +  +
Sbjct: 301 TQQHYQMNQNMYPGEMYNPEHTTV 324


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = -1

Query: 607 TNYHYLSTATCFHGEFYDPAYRRI 536
           T  HY      + GE Y+P +  +
Sbjct: 249 TQQHYQMNQNMYPGEMYNPEHTTV 272


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = -1

Query: 607 TNYHYLSTATCFHGEFYDPAYRRI 536
           T  HY      + GE Y+P +  +
Sbjct: 432 TQQHYQMNQNMYPGEMYNPEHTTV 455


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,818
Number of Sequences: 336
Number of extensions: 4324
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)