Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10e03r
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.56 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    28   1.3  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    27   2.3  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   3.0  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   3.0  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   3.9  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    26   3.9  
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   5.2  
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   5.2  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.2  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   5.2  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   6.9  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   6.9  

>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 61  RGRRHWNCSFQKTQCLP-THFGRRQGHPSQYYRSHGHHPGPNRRRICDQSRRDH 219
           +  +H+  S++ ++    +H+  +  H S+Y R+    PG N     DQS   H
Sbjct: 184 KNHKHYENSYRPSRSQNNSHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 522 PVVVSQVKYLMFTLPLTIPNSLRRITTRM*ASYE*HMPSTSAQISSRV 379
           P ++  V YL+ T+  T+P +L  I   M A+ +   PS  A  + R+
Sbjct: 288 PNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRI 335


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 606 PTTTTFQLLPVSMENSTILHTVALSLDLPVVVSQVKYLMFT--LPLTIPNSL 457
           P+  T  +L      ++IL T+  SL   +VVS   Y +FT  LP T   S+
Sbjct: 89  PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSV 140


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 94  FGKSNSNDAYPVVLTSISSFTEWILKT 14
           FG S +N   PV L S  SFT +++K+
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 285 PSDALPP*TVVPHPSRSTKIPWGITTPCWIIAPCWI 392
           PSDA    T VP  + S   PW  TTP     P W+
Sbjct: 21  PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -1

Query: 220 HDRVVTDHKFCAGLVRDGGRDYDNTDLGAPAFFQNALVGI-VSFGKSNSNDAYPVVLTSI 44
           HD VVT  +  + L+ D       + L       NAL  + V FGK+ SND     L + 
Sbjct: 587 HDLVVTVERHVSTLLADSSSIVRRSLL-------NALAPLCVFFGKAKSNDLILSHLITY 639

Query: 43  SSFTEWILK 17
            + T+W+L+
Sbjct: 640 LNDTDWMLR 648


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 436 HPCRNSPQRIGDG*RQSEHKIFHLA--HYDGKIQR 534
           H C  +P+ I  G RQ E  ++H+A   +D KI R
Sbjct: 11  HLCMRNPKLIRIGLRQVESIVYHVAKPSHDDKIPR 45


>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 214 DHDPYTGSCSFLCWS 258
           DH+PYT S S +C S
Sbjct: 91  DHEPYTASLSHICHS 105


>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 214 DHDPYTGSCSFLCWS 258
           DH+PYT S S +C S
Sbjct: 91  DHEPYTASLSHICHS 105


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 596 LPFNCYLFPWRILRSCIPSHYRWIFP 519
           LP + + F W    +C P H  WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
 Frame = +1

Query: 115 HFGRRQGHPSQYY----RSHGHHPGPNRRRICDQSRRDHDP 225
           H+       S YY    R HG  P P RR +    RR  DP
Sbjct: 147 HYYHAGSESSAYYDSRSRLHGIQPPPKRRTLSPPPRRLADP 187


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -2

Query: 630 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVVVSQVKYLMFTLPLTIPNS 460
           N  L+ F  T T    LLP++     I  ++TV LSL +  V S V+ L+F +   +   
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349

Query: 459 LRRITTRM 436
           +  +T ++
Sbjct: 350 VNELTLKL 357


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 130 AFFQNALVGIVSFGKSNSNDAYPVVLTSISSFTEWILKTL 11
           AF+ N++VG++   K+         + +IS FT   LK+L
Sbjct: 505 AFYINSMVGLLLLTKNYQERLMDSRIDAISKFTHSYLKSL 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,620
Number of Sequences: 5004
Number of extensions: 66749
Number of successful extensions: 183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)