BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV10e03r (634 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 32 0.28 At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 32 0.28 At1g01150.1 68414.m00024 expressed protein ; expression supporte... 31 0.48 At5g62380.1 68418.m07829 no apical meristem (NAM) family protein... 29 3.4 At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 29 3.4 At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 28 5.9 At3g06080.2 68416.m00695 expressed protein identical to unknown ... 27 7.8 At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi... 27 7.8 >At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly identical to 3-phosphoserine phosphatase GI:3759177 from [Arabidopsis thaliana] Length = 295 Score = 32.3 bits (70), Expect = 0.28 Identities = 10/35 (28%), Positives = 22/35 (62%) Frame = +2 Query: 341 NTLGYYDTLLDNSTLLDIWAEVDGMCYSYDAHILV 445 +TLG+ ++ + +LD+W V+ +C+ D+ + V Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96 >At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly identical to 3-phosphoserine phosphatase GI:3759177 from [Arabidopsis thaliana] Length = 295 Score = 32.3 bits (70), Expect = 0.28 Identities = 10/35 (28%), Positives = 22/35 (62%) Frame = +2 Query: 341 NTLGYYDTLLDNSTLLDIWAEVDGMCYSYDAHILV 445 +TLG+ ++ + +LD+W V+ +C+ D+ + V Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96 >At1g01150.1 68414.m00024 expressed protein ; expression supported by MPSS Length = 345 Score = 31.5 bits (68), Expect = 0.48 Identities = 24/106 (22%), Positives = 50/106 (47%) Frame = +2 Query: 242 VFFVGHNEFELVEVAVRCTATLNGSSPSEQINKNTLGYYDTLLDNSTLLDIWAEVDGMCY 421 V + + E L E + + T+N + P ++I + G + T ++S L D W ++ + Sbjct: 235 VLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNMNYLDL 294 Query: 422 SYDAHILVVILLRELGMVNGKVNIRYFTWLTTTGRSSDNATVCRIV 559 + I ++I++ E+G NG+ R + R+ +C +V Sbjct: 295 -VEVEIDIIIVVAEIGDQNGEGKKRRSDEEDESNRNHPKIRICGMV 339 >At5g62380.1 68418.m07829 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; OsNAC7, Oryza sativa, EMBL:AB028186 Length = 348 Score = 28.7 bits (61), Expect = 3.4 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -1 Query: 166 GRDYDNTDLGAPAFFQNALVGIVSFGKSNSNDAYPVVLTSISSFTEWILK 17 G Y DL +P FQ + +S N D Y VVL++I++ I++ Sbjct: 190 GNYYHLPDLESPRMFQGSSSSSLSSLHQNDQDPYGVVLSTINATPTTIMQ 239 >At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type Length = 446 Score = 28.7 bits (61), Expect = 3.4 Identities = 17/57 (29%), Positives = 23/57 (40%) Frame = -1 Query: 244 NCRNQYKDHDRVVTDHKFCAGLVRDGGRDYDNTDLGAPAFFQNALVGIVSFGKSNSN 74 +C + D +T FC L + R APA+ NAL V+ G N N Sbjct: 175 DCGTLFSRKDSFITHRAFCDALAEESARFVSVPP--APAYLNNALDVEVNHGNINQN 229 >At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain Length = 284 Score = 27.9 bits (59), Expect = 5.9 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +3 Query: 294 ALPP*TVVPHPSRSTKIPWGITTPCWIIAPCWIFGP 401 A+PP ++ HPS + +G P I APC + P Sbjct: 134 AMPPGSIPMHPSMPSYTYFGNQNPSMIPAPCPTYMP 169 >At3g06080.2 68416.m00695 expressed protein identical to unknown protein GB:AAF30301 from [Arabidopsis thaliana] Length = 469 Score = 27.5 bits (58), Expect = 7.8 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 124 RRQGHPSQYYRSHGHHPGPNRRRIC 198 R+ GHPS YY H P P R+ C Sbjct: 402 RKDGHPSLYYLG-PHGPAPLHRQDC 425 >At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 656 Score = 27.5 bits (58), Expect = 7.8 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -1 Query: 151 NTDLGAPAFFQNALVGIVSFGKSNSNDAYPVVLTSIS 41 N +G AF NA + FG SN YP +T +S Sbjct: 479 NAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVS 515 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,689,077 Number of Sequences: 28952 Number of extensions: 366262 Number of successful extensions: 981 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 956 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 981 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1295224128 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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