Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10e02f
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30180.1 68417.m04291 expressed protein 30 1.1
At4g13800.1 68417.m02139 permease-related contains 9 predicted t... 29 1.8
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ... 28 5.6
At5g67370.1 68418.m08495 expressed protein similar to unknown pr... 27 7.4
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|... 27 7.4
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|... 27 7.4
At5g03270.1 68418.m00276 expressed protein contains Pfam profile... 27 7.4
At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family pr... 27 7.4
At5g23410.1 68418.m02745 expressed protein similar to Adagio 3 [... 27 9.8
>At4g30180.1 68417.m04291 expressed protein
Length = 158
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 45 SSQQY*WRWRPWSWQKRPSNLTTTTRSVSPGLRVLDAPRK 164
S+Q++ W SN TTTT S S G+R+L+ P K
Sbjct: 62 SAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDK 101
>At4g13800.1 68417.m02139 permease-related contains 9 predicted
transmembrane domains; contains Pfam PF05653: Protein of
unknown function (DUF803); identified as COG0697,
Permeases of the drug/metabolite transporter (DMT)
superfamily
Length = 336
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 244 HKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKT 143
HK+ MG STS+ G T+H+P V G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327
>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
(ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
from [Arabidopsis thaliana]; contains Pfam profiles
PF01344: Kelch motif, PF00785: PAC motif and PF00646:
F-box domain; contains TIGRfam profile TIGR00229: PAS
domain S-boxidentical to cDNA Adagio 3 (ADO3)
GI:13487071
Length = 619
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 326 WRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLN 457
WR N + LA+G + GGTRV H + +N L+
Sbjct: 564 WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWILNELH 607
>At5g67370.1 68418.m08495 expressed protein similar to unknown
protein (gb|AAC18972.1)
Length = 327
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 181 YQDCGWFCRQRWCSPPSCWTCDR 249
Y++ GW+ Q W PP DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207
>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 435
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 96 PSNLTTTTRSVSPGLRVLDAPRKPL 170
PS+ TTTTR+ SP + ++ PL
Sbjct: 27 PSSSTTTTRATSPSSTISESSNSPL 51
>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 424
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 96 PSNLTTTTRSVSPGLRVLDAPRKPL 170
PS+ TTTTR+ SP + ++ PL
Sbjct: 27 PSSSTTTTRATSPSSTISESSNSPL 51
>At5g03270.1 68418.m00276 expressed protein contains Pfam profile
PF03641: decarboxylase family protein
Length = 229
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +2
Query: 275 CGASLLTNTRSVTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNL 454
CG+S N S A + R+ L +G +I G + + +VH G +N NN
Sbjct: 25 CGSSN-GNKASYQDAAIDLAKELVMRKIDLVYGGGSI--GLMGLVSQAVHDGGRHNNNNN 81
Query: 455 NNDVAIINHN 484
ND A+ H+
Sbjct: 82 GNDDALFCHS 91
>At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 253
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -3
Query: 259 IRECDHKSSKMGVSTSVGGRTTH-NPGTVEVSGFLGASKTLSPGDTDLVVVVKFDGLFCH 83
+ C+ K+ K + V R T+E S + +TL P +TD + V+ F
Sbjct: 92 VLSCNSKTDKATLLAKVVQRVRELKQQTLETSD---SDQTLLPSETDEISVLHFGDYSND 148
Query: 82 DHGRQRHQYCCED 44
H + CCED
Sbjct: 149 GHIIFKASLCCED 161
>At5g23410.1 68418.m02745 expressed protein similar to Adagio 3
[Arabidopsis thaliana] GI:13487072/FKF1 [Arabidopsis
thaliana] GI:6960305
Length = 84
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 326 WRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLN 457
WR N + LA+G + GGTRV H + +N L+
Sbjct: 29 WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHNGEEWILNELH 72
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,606,241
Number of Sequences: 28952
Number of extensions: 186946
Number of successful extensions: 633
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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