Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d24r
(555 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical pr... 29 1.7
U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical pr... 29 1.7
U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical pr... 29 1.7
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 5.2
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 28 5.2
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 28 5.2
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 5.2
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 5.2
Z95559-10|CAB63364.2| 327|Caenorhabditis elegans Hypothetical p... 27 6.9
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 27 9.1
>Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical
protein K09A11.5 protein.
Length = 650
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +3
Query: 309 RRVPHVDSPRVSCSSTAHNKAP*ESIT*SNTSDTQSVRSISGSGVSHFIS 458
R + DS SS A NK P S + S +S R S + VSHF S
Sbjct: 391 RNLDSSDSRNTHSSSEASNKTPKRSFGMISPSGMESFRQSSFANVSHFPS 440
>U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical
protein C49H3.6b protein.
Length = 498
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 223 KPTPPPVRRTLANCVDPRTRTALTRLPAGAVYLTLTARELVVAARLTTKLRKSLSLEV-I 399
+P PPPV R + P ++ L R P AV + + ++ + +++S V
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415
Query: 400 LPILKALDLSV--DLGSATSLVDTATIAVNTN 489
P++ +V +AT+ + T ++ NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447
>U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical
protein C49H3.6a protein.
Length = 552
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 223 KPTPPPVRRTLANCVDPRTRTALTRLPAGAVYLTLTARELVVAARLTTKLRKSLSLEV-I 399
+P PPPV R + P ++ L R P AV + + ++ + +++S V
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPVKK 415
Query: 400 LPILKALDLSV--DLGSATSLVDTATIAVNTN 489
P++ +V +AT+ + T ++ NT+
Sbjct: 416 TPVMGVSSTAVRRPQSAATTTMPTTSVITNTS 447
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 254 SVRRTGGGVGFTFVNLQFVNAPRRGFSFTVQVWGR*NAYSGRL 126
++R+ GGG+G + V Q V + G V G A+ GRL
Sbjct: 974 TLRKNGGGIGLSIVAAQGVGDRQMGIYVKKVVEGTPAAHDGRL 1016
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 254 SVRRTGGGVGFTFVNLQFVNAPRRGFSFTVQVWGR*NAYSGRL 126
++R+ GGG+G + V Q V + G V G A+ GRL
Sbjct: 972 TLRKNGGGIGLSIVAAQGVGDRQMGIYVKKVVEGTPAAHDGRL 1014
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 254 SVRRTGGGVGFTFVNLQFVNAPRRGFSFTVQVWGR*NAYSGRL 126
++R+ GGG+G + V Q V + G V G A+ GRL
Sbjct: 972 TLRKNGGGIGLSIVAAQGVGDRQMGIYVKKVVEGTPAAHDGRL 1014
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 254 SVRRTGGGVGFTFVNLQFVNAPRRGFSFTVQVWGR*NAYSGRL 126
++R+ GGG+G + V Q V + G V G A+ GRL
Sbjct: 972 TLRKNGGGIGLSIVAAQGVGDRQMGIYVKKVVEGTPAAHDGRL 1014
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 254 SVRRTGGGVGFTFVNLQFVNAPRRGFSFTVQVWGR*NAYSGRL 126
++R+ GGG+G + V Q V + G V G A+ GRL
Sbjct: 972 TLRKNGGGIGLSIVAAQGVGDRQMGIYVKKVVEGTPAAHDGRL 1014
>Z95559-10|CAB63364.2| 327|Caenorhabditis elegans Hypothetical
protein Y41E3.15 protein.
Length = 327
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = -1
Query: 156 GTLKCIFWTFTCKDTKFLFFRLHKKFVLPIF--LINDSRIYYEASLSFFFG 10
GT+ W +C T FLF LP + LI Y+ LS +G
Sbjct: 111 GTIVLTTWCTSCACTLFLFINRIVNITLPQYSDLIEAKLAYFSIILSIIYG 161
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +1
Query: 169 VKLNPLRGAFTN*RFTKVKPTPPPVRRTLANCVDPRTRTALTRLPAGAVYLTLTARELVV 348
++ + + G +T+ +T PTPPP + D R L+R ++ RE V
Sbjct: 2084 IQASDVEGFWTDGAYTDSAPTPPPQPIHRSTAEDNMQRIGLSRTTTEPEFIKAFEREYTV 2143
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,819,328
Number of Sequences: 27780
Number of extensions: 198712
Number of successful extensions: 555
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -