Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d23r
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    95   6e-21
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    56   4e-09
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    33   0.051
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    27   1.9  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    25   7.8  
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   7.8  

>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 95.5 bits (227), Expect = 6e-21
 Identities = 42/47 (89%), Positives = 44/47 (93%)
 Frame = -2

Query: 686 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 546
           AMNAAEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS  LKN
Sbjct: 133 AMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 25/46 (54%), Positives = 32/46 (69%)
 Frame = -2

Query: 686 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 549
           A++ A+ITD L L  L++R W +Q TCA +GDGL EGL WLS   K
Sbjct: 137 ALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 32.7 bits (71), Expect = 0.051
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -2

Query: 686 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 549
           A+++ EI+  L +   ++ +W I +  A +G  + + + WL+N LK
Sbjct: 132 ALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 341 LKYCFSKYYINYVYLNAINGMQINSVQ 261
           L YC   Y+INY+  ++IN   ++ +Q
Sbjct: 33  LSYCCVSYFINYLDRSSINNAYLSGMQ 59


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 34  D*LITRQLHTYPHHNVRSHRGDVTPFPSAI 123
           D L T+++  Y  HN+   + D+TP+P  I
Sbjct: 393 DSLETKEMF-YLRHNIAGFQADLTPYPMRI 421


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 577 PSYSPSPEVAHVAWMYQL 630
           P+ SP PEV+H  W+  L
Sbjct: 16  PNSSPDPEVSHKLWVSSL 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,411
Number of Sequences: 5004
Number of extensions: 60627
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)