Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10d23r
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56255| Best HMM Match : Arf (HMM E-Value=0) 99 3e-21
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 8e-15
SB_11310| Best HMM Match : Arf (HMM E-Value=0) 72 4e-13
SB_53421| Best HMM Match : Arf (HMM E-Value=0) 66 3e-11
SB_37042| Best HMM Match : Arf (HMM E-Value=0) 48 7e-06
SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44) 44 1e-04
SB_57342| Best HMM Match : Arf (HMM E-Value=0) 42 6e-04
SB_19345| Best HMM Match : Arf (HMM E-Value=3.3e-05) 38 0.006
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_18358| Best HMM Match : Arf (HMM E-Value=0) 36 0.023
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13) 36 0.023
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_31113| Best HMM Match : Herpes_U15 (HMM E-Value=8) 29 4.7
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
Length = 181
Score = 99.1 bits (236), Expect = 3e-21
Identities = 44/47 (93%), Positives = 45/47 (95%)
Frame = -2
Query: 686 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 546
AMNAAEITDKLGLHSLRNR WYIQATCATSGDGLYEGLDWLSN LK+
Sbjct: 133 AMNAAEITDKLGLHSLRNRQWYIQATCATSGDGLYEGLDWLSNTLKS 179
>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 77.8 bits (183), Expect = 8e-15
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = -2
Query: 686 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 552
A++ +EIT+KLGL S+R+R WYIQA CAT G GLYEGLDWLSN+L
Sbjct: 133 ALSVSEITEKLGLQSIRDRQWYIQAACATQGTGLYEGLDWLSNEL 177
>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
Length = 255
Score = 72.1 bits (169), Expect = 4e-13
Identities = 27/46 (58%), Positives = 39/46 (84%)
Frame = -2
Query: 686 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 549
+M+ E+++KL LH+LR+RNWYIQATCA G G+YEGL+WL+ Q++
Sbjct: 206 SMSTTELSEKLSLHTLRSRNWYIQATCALKGQGVYEGLEWLAQQIQ 251
>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
Length = 625
Score = 65.7 bits (153), Expect = 3e-11
Identities = 24/47 (51%), Positives = 37/47 (78%)
Frame = -2
Query: 686 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 546
AM A+EI +KL L+ +R R W++Q+ CA G+GL+EGLDW++ Q++N
Sbjct: 112 AMTASEIREKLKLNEIRGRPWFVQSACAVKGEGLFEGLDWMATQIRN 158
>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
Length = 188
Score = 48.0 bits (109), Expect = 7e-06
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -2
Query: 686 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNANR 537
A+ A E+ LGL + W++Q CAT+GDGLYE +D + +K+ ++
Sbjct: 136 ALKAGEMAKHLGLLQHKRNPWHVQEACATNGDGLYEAMDHMVRMVKDFHK 185
>SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44)
Length = 257
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/40 (42%), Positives = 29/40 (72%)
Frame = -2
Query: 686 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 567
AM+++E+++ LGL +L++R W I T A G+GL E ++W
Sbjct: 218 AMSSSEVSNALGLSALKSRTWAIFKTSAVKGEGLDEAMEW 257
>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
Length = 457
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = -2
Query: 686 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLS 561
A+ ++ ++L L+ W IQ TCAT+GDGLYE ++ L+
Sbjct: 226 AIGPDKMAEELSLYKHTKNPWRIQGTCATAGDGLYEAMEALA 267
>SB_19345| Best HMM Match : Arf (HMM E-Value=3.3e-05)
Length = 222
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 683 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 552
++ +TD L ++ L NR W + C + DGL EG+ WL Q+
Sbjct: 179 LSCVRVTDMLQMNKL-NRPWQVNMMCVENLDGLLEGMTWLLKQV 221
>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -2
Query: 686 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGL 585
A AEI+ LGL+++R+R W IQ A +G+G+
Sbjct: 117 AATPAEISSNLGLNTIRSRGWQIQGCSALTGEGV 150
>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
Length = 214
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 686 AMNAAEITDKLGLHSLRNRN-WYIQATCATSGDGLYEGLDWLSNQL 552
A+ EIT L LH L R+ W++Q A G+GL +GL LS +
Sbjct: 138 AIPPREITHMLSLHDLNARHLWFVQPCSALLGEGLLDGLRALSEMI 183
>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
Length = 334
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 683 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 558
+ A +I + LGL L+ ++Q A++GDGL E WL N
Sbjct: 87 LKAGDIAEHLGLLKLKRNPLHVQEAFASNGDGLCEAHKWLPN 128
>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 613 RHAPLPETDCTR--VSTGSPISSRTPTANRMCANSQTNLIIERDYGLRYVN 467
+ +P+ ET+ R VS SP+S +P R + + L YG +Y N
Sbjct: 606 QRSPIRETEAQRSPVSQRSPVSQNSPVPQRSPTSKHSPLSQRHSYGSQYSN 656
>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2371
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = -3
Query: 640 CATVTGTSKRHAPLPETDCTRVSTGSPISSRTPT-ANRMCANSQTNLIIERDYGLRYVNF 464
CA T S + RV G SS T + +R C S T + + + RY+
Sbjct: 383 CAVATQGSADSEDWIQVTGLRVFDGDFDSSATVSNLSRFCVISPTVMFVPSRFSSRYLMV 442
Query: 463 ICY*IQCIMCGIINVLLTRHL 401
I +Q + + N L+ RH+
Sbjct: 443 ILTAVQTVKQFLRNALVARHV 463
>SB_31113| Best HMM Match : Herpes_U15 (HMM E-Value=8)
Length = 133
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 368 GSERMRRAFGHQMTRQ*YIYDSAHNTLYLIANKVNIS*TIVSFNYQICLRVGAHT-VSGW 544
G RA + Q +Y+S +N+L ++ + + T VS Q+ +R+ H V+ W
Sbjct: 52 GGSTSSRAAATAVELQFALYESYYNSLAVVLQRRDWENTGVS---QV-IRLAVHPPVASW 107
Query: 545 RS*ADWRASRDPRTVRLRKWRM 610
R+ + R R + + +WRM
Sbjct: 108 RNSEEARTDRPSQELLQSEWRM 129
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 468 LTYLKP*SLSIIRFVCELAHIRLAVGVLELIGEP-VETLVQSVSGSGACRLDVPVTVAQR 644
L+YL P +LS++ F C + +A E P + +L+Q ++ +LD P + ++
Sbjct: 2209 LSYLSPANLSVL-FDCLMESHTVAY---EFNARPGLRSLIQKLA-----KLDAPANLLRQ 2259
Query: 645 MQTQFVCYL 671
T F CYL
Sbjct: 2260 STTAFTCYL 2268
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,328,879
Number of Sequences: 59808
Number of extensions: 473034
Number of successful extensions: 1113
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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