Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d23r
         (687 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    25   2.2  
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    25   3.0  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   6.8  

>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 672  RDNRQT-GSAFAAQP*LVH--PSDMRHFRRRTVRGSRLALQSAQERQ 541
            R+ +QT  +A AAQP      P DM    RR +R   +  +SAQ R+
Sbjct: 1018 REEQQTLAAAEAAQPDPASSLPEDMAEAERRLLRRREVRNRSAQRRR 1064


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = -3

Query: 622 TSKRHAPLPETDCTRVSTGSPISSRTPTANRMCANSQTNLIIERDYGLRYVNFICY*IQC 443
           T+  + P+P    TR+  G P S R P++++M    Q   + + D      N   Y  +C
Sbjct: 242 TTVSYQPVPTGTPTRMLNGEPASQR-PSSSQM----QRPKVQQLDTAAAPTNHHLY--RC 294

Query: 442 IMCGIINVLLT 410
             CG + V LT
Sbjct: 295 PACGNLFVELT 305


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 567 PVETLVQSVSGSGACRLDVPVTV--AQRMQTQFVCYLGCV 680
           P +T + ++S      ++VPV +   +R  T+ + YLG V
Sbjct: 718 PAKTELVTISSKRQGNINVPVVINGVERRTTRSIRYLGVV 757


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 766,748
Number of Sequences: 2352
Number of extensions: 17099
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)