Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d22r
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        30   0.29 
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    30   0.29 
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    27   3.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   3.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   3.5  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   6.2  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   6.2  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   8.2  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -1

Query: 374  NETIKAPDFDSMSDASNDSDLIGIED--LPHFGENNYFPHDFDEMKTDKPEDI 222
            N+ ++  D     D    SD +GI+D   P   ENN  P   +E   D PED+
Sbjct: 4038 NKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDHLDLPEDL 4090


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -1

Query: 383 PIWNETIKAPDFDSMSDASNDSDLIGIEDLPHFGENNYFPHDFDEMKTD--KPED 225
           P +++T   P F  +S  ++ + L       H    NY  HD D    D  K ED
Sbjct: 676 PEYSKTASRPQFSDISSTASSNSLSNKPGFAHSESRNYHTHDEDNSSDDNHKRED 730


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 425 AAPGTNKHAVEGSNPIWNETI--KAPDFDSMSDASNDSDLIGIEDLP 291
           ++P      V GS P+ + T+  K   F   SDAS+  D     DLP
Sbjct: 195 SSPFPPPRIVLGSKPVSSSTLPSKPKSFQVFSDASSSRDSQNASDLP 241


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = -1

Query: 458 SVDSGLNRVGIAAPGTNKHAVEGSNPIWNETIKAPDFDSMSDASNDSDLIGIEDLPHFGE 279
           S DSG+ R   A  G      EG +   +      +FDS  D  ND+D     D  +   
Sbjct: 486 SADSGIRRHLEAMCGATVERKEGGSNSSSNISNVANFDSAED-DNDNDNDNDRDSNNNNN 544

Query: 278 NNYFPHDFDE 249
           NN    D D+
Sbjct: 545 NNNTNTDDDD 554


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = -1

Query: 458 SVDSGLNRVGIAAPGTNKHAVEGSNPIWNETIKAPDFDSMSDASNDSDLIGIEDLPHFGE 279
           S DSG+ R   A  G      EG +   +      +FDS  D  ND+D     D  +   
Sbjct: 486 SADSGIRRHLEAMCGATVERKEGGSNSSSNISNVANFDSAED-DNDNDNDNDRDSNNNNN 544

Query: 278 NNYFPHDFDE 249
           NN    D D+
Sbjct: 545 NNNTNTDDDD 554


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 263 HDFDEMKTDKPEDIVATHNNNFGFKSTPFSPEFANQF 153
           H+ DE   D+PE++V   +NN+         +F N F
Sbjct: 168 HEMDEA-FDRPEEVVYVDDNNYNNFDDYGGNDFGNDF 203


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
 Frame = -1

Query: 275 NYFPHDFDEMKTD------KPEDIVATHNNNF 198
           NYFP +FDE K D      KP+      NN+F
Sbjct: 73  NYFPPEFDENKVDWKQEKPKPDAPSFADNNSF 104


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -3

Query: 393 RLQSDLERD---H*SPGLRFYERCIERL*SNRH 304
           R   D+ERD   H    LRFYE   +R+ +N H
Sbjct: 307 RSHHDIERDQAKHVKKALRFYEGLTKRVSANGH 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,297
Number of Sequences: 5004
Number of extensions: 50703
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)