Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10d22r
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    32   0.52 
02_04_0073 - 19471254-19472681                                         30   2.1  
02_02_0469 + 10691648-10691692,10691755-10691907,10692043-106920...    30   2.1  
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876...    29   3.7  
03_01_0427 + 3296717-3296861,3296966-3297210                           29   3.7  
05_03_0146 + 8883761-8883860,8886000-8886086,8886574-8886684,888...    28   8.5  
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227...    28   8.5  

>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
            33319949-33320011,33320103-33320496,33320684-33320796,
            33320932-33321639,33321667-33323199,33323395-33323607,
            33323718-33324700,33324890-33325423,33325694-33325820,
            33326083-33326162,33327347-33327377,33327949-33328053,
            33328119-33328124,33328349-33328985,33329144-33329478,
            33330394-33331113
          Length = 2792

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 365  IKAPDFDSMSDASNDSDLIGIED-LPHFGENNYFPHDFDEMKTDKPEDIVATHNNNF 198
            IKAPD D +       +    +  + HFG NN    +  E +T  P DIV TH + F
Sbjct: 2640 IKAPDRDKLLRIGKQGEAAAHQHFVDHFGSNNVRWVN-QENETGLPYDIVVTHKSGF 2695


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 287 FGENNYFPHDFDEMKTDKPEDIVATHNNNFGFKSTPFSPEF 165
           F EN+Y+ H F     DK E+++  H+   G +  PF   F
Sbjct: 360 FIENSYYLHGFWAGLVDKYEEMMENHHPGLGDERWPFVTHF 400


>02_02_0469 +
           10691648-10691692,10691755-10691907,10692043-10692093,
           10692162-10692224,10692327-10693031,10693128-10693223,
           10693307-10695547
          Length = 1117

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -1

Query: 371 ETIKAPDFDSMSDASNDSDLIGIEDLPHFGENNYFPHDFDEMKTDKPED 225
           E+ +AP  D+ S++++DS   G E     G+  YF   FDE+K  +P +
Sbjct: 415 ESSEAPSEDTSSESNSDSSS-GDESDKELGK--YFYPSFDELKNSRPPE 460


>06_03_1488 +
           30484904-30485134,30485239-30487159,30487255-30487691,
           30487777-30487983
          Length = 931

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -2

Query: 238 ISPKT*WQHTTTISASNQHPSVRNLQINSRNKLNNETEIQFVLKFFF-YGFYKCIPTHFT 62
           +SPK+  +  TT  ASN+  S +N + N+     + TE+ ++ +     G Y+   ++ +
Sbjct: 719 LSPKSWSEFDTTPIASNESSSCKN-RTNATETEESYTEMAYIKQVLIAVGLYEDGSSYSS 777

Query: 61  KKRNANLQSDTFVTQFICKY 2
                N + D+   + IC Y
Sbjct: 778 PSMMNNARVDSMARRPICDY 797


>03_01_0427 + 3296717-3296861,3296966-3297210
          Length = 129

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 692 MVLLTAIQSTLATRLLVLRDLFTDTSP--APDAGS 594
           +VLL  + ST+ATR  V  D F+  SP  AP  GS
Sbjct: 16  VVLLLIVASTVATRAAVADDFFSPLSPLLAPVIGS 50


>05_03_0146 +
           8883761-8883860,8886000-8886086,8886574-8886684,
           8887021-8887121,8887208-8887258,8887347-8887496,
           8887577-8887639,8887728-8887814,8887908-8888018,
           8888097-8888387,8889372-8889815
          Length = 531

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 211 TTTISASNQHPSVRNLQINSRNK 143
           TT    SN+HP+  ++Q NSRN+
Sbjct: 225 TTMAMQSNEHPNEEDIQQNSRNE 247


>04_03_0812 -
           19922208-19922357,19922448-19922564,19922681-19922752,
           19922864-19923993,19924939-19925008,19925125-19925199
          Length = 537

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -1

Query: 377 WNETIKAPDFDSMSDASNDSDL-IGIEDLPHFGENNYF---PHDFDEMKTDKPED 225
           W+E  K PD D++     D D  + IED        +    P + D+ + +KPED
Sbjct: 230 WDERAKIPDPDAVKPDDWDEDAPMEIEDEEATKPEGWLDDEPEEIDDPEANKPED 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,847,306
Number of Sequences: 37544
Number of extensions: 320988
Number of successful extensions: 827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)